RNA id: TCONS_00007905


Basic Information

Item Value
RNA id TCONS_00007905
length 6028
RNA type mRNA
GC content 0.43
exon number 19
gene id XLOC_004138
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24464356 ~ 24538860 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTATTTACTCATAAACCCAAAAGCTGTATTATATAAATGAAATCAGTTGGATATTCACAAGGGAACCCATAGCCTTCATGCACAGTCACATTAAGCATTGTCTAGCGAATTTCTGTGGGCAAAATACAGTCATTTCAATTGGAATCCAAACAGGCTAGAATTACACAGACTCATCTGAGAGTCAAAAGATTTCCCCACACAGTTCTCTCAGTGGGTTCAAGTTTGTCTCATGAACTGGCAAAAAGTGAGTGGAAGACCTGTTGTAACAAACACTACTGATAATGACAGtgggtttttatttttgtcagagaAACTTTGTTAAAGTGACagtacccagcaaacaattttgtgtttattagacatctaatagacatctaaacgttgaccgcttggctaaaacaaggctaaatttgggctgtcaatgaaaatatatagacatctaagaatagcctgAAGCTAGACTAGTTGTCAaaaagacagattagacagactttatatgtgtagtcattaatttctgtttatttaatgaatAGTCTAGATTAGGCCTAGATTAGGATTCTTAGATGtgtattagattttcactgacagcccaaatttagccttgttttagccaagacaactatgtttagacgtctattagacatctattaaatctcttttaaaaacaaatatgctTGCTGGGTACTTTTAGAGTTTGGCCTACACACACTTCAAGTTGATTTTTAACCTCTATTTATGATATTCCAGGTGAGAAACCTGCACCTGAACAGAAACCCGGCCTCTTGTGTCAGCATCCCAACTGTCCCGAACAGCGGCTTGCATCCAAGGTTTGTCACCACCCGTCCTGTCAGGACCTTCGAGACGGCAGTCCATTACACTTGTGTGAGTCATGTGACTCCATCTGCCATCCAGCCGCTCATGACGGCATGATATTTGACAGGCACCCGCGCTTTGACCTGCAGCCACAAGGTTCCATCCTGGCCCGGAACGTGTCCACTCGTTCCTGTCCGCCTCGCACTGGTCCCCCCTCTGACATGGAGGACGGAGAGGATGGATGTTCAGACCTAGGGGATCGCAGGAGTGGAGGAATGAAACTGGTTAAAAAGAAGACCAGACGTCGACACACAGATGACCCCAGCAAGGAGTGCTTCACTCTGAAGTTTGACTTAAATTTTGAGGTCAGCATGGAGATCGTCCCAGCCGTGAAGAAGAAAACCTTGAGAGAAGTGCTGGGAGCTGTGTTTGAAAGAAAAGGCATTGAGCTGTCACGTGTAAACCTGTTCCTGGATCAGTCCAATACACCGCTTTCACTGGGATTTGAAGCCTACCGCTTTGGTGGCCACTACCTCAGAGTACGAGccCGACCAGGAGAGGATCTAAGGGTGGAGAGGTGTGTGAAAGATCCTCGTTCTCTCAGTCTGCCTATCATGAGGTCCTCCAGCAACACGCACAGCTCCTCTACTGACCGAGCGGAGCATGGCTCTCTTGGACGCCGAGAGGCAGCAGACCTGCTAGTCGGCCTGGTAGGTCATGCTGCCTACATACAGAAGAATGGGGGTCAAACACGTCGGCGAAAGAACATGCCGGAGTTTCTGGGTGACTCCAGCATCTCAAACCAAGACTCCCTGTCCCAGCTTAGTGGATCTCTTCCAGGATCTATAACAGGTCCCGACCGATGGAGGAACCGCGCCGCCAGCCGATTCAGCGGCCTATTCAGCTCCAACTCAGGAAATGGCTCTCTAGGGAAGGAGTGTGATCGTGTAGAGCAGCTGCAGAGTAAGTTATACTCATACACCATGTTTGGATTACCCAAGATGCCTCCGCAGCTCTCGTTCCACAGAGACTCTTGGGAAGAGGAGCCCAATCTGGAGCTTGAAGAGAGCTGGAAGCAGCTTTTGGAGAATCCTGAGatTTTAACCAGACGTCAATGCCATCAGCAAGAAGCCATATGGGAACTCCTGCAGACCGAATCAGACTACATCAAGAAACTGCATGTTATTACTGATCTGTTTCTGTGTGGCCTGCTGAACCTGCAGGAGAGTGGTTTATTAACTGAAGTCGAACCCACACGTCTCTTCAGTAACATTCAGGACATTGTGCAACTGCATTCATCCCTGTGGACTGAGGTCATGCTGCCGGCGTTGGAGAAAGCCAGACAGAAGAGAACAATGCTCAACCCCACTGAACTACATCAGGGCTTCAGTACATTTGGTTTCAGATTCAAGCCTTACATCCGTTACTGCATGGAAGAGGAGGGTTGTATGGAGTACATGCGCACTTTACTGAAAGACAACGAGCTCTTCAGAATATATGTTACTTGGGCAGAAACTCATAAACAGTGCAACCGGCTGAAGCTGACAGACATGTTGGTGAAGCCTCATCAAAGACTCACTAAATACCCACTGCTGCTCAAAAGTGTGCTGAAAAAGACTGACGACCCGCCAACTCGAGAGGCCATTAACAGAATGgTGGCCGCTGTGGAATGCTTCATTAACAGTGTGGACTCGCAGATGAGGCACAGGGAGGAAAAACAGAAGCTGGCTGCCATCGCTGGCCGTATCGAGGCGTATGAGGCTGTGGAGGGGGCCAGTGAAGAAGTAGAGAGGATCCTCAAGGAATATAATAACTTTGACCTGATGGCTCCGGTGATGGGTGCACCTCCTGAAGAGACCCGGCAGCTACTTCTAGAGGGAGCTCTGAAGATGAAGGAGGGCAAAGAGAGCAGGATGGATGTGTACTGTTTCCTGTTCACTGACGTTCTGTTGATCACCAAGCCGGTGAAGCGTGTGGAGAAAGTGAAGGTGATCCGGCAGCCTCTTGTCATCCATAACGTTGTGTGCCGGGAACTGAAAGACCCAGGAAGCTTCCTCCTTATCTACCTCAATGAGTTTGGCTGTGCTGTGGCCTCGTACTGCTTTCAGGCCAACAGTGGCGCTCAGGGTCGCAGCTGGATTGAGGCCATCTACAACGCACAGAATCAGCTTCAGAGACTTCGCTCAGAGACGCAGAGAGATGAGAGCGATGAAAAAGATGAAGATGAGACAGAGAGCAGCATGTCCACCTCCAGCTCTCCATCCATACACCACAGAGAGACACTAAGCAAGAGCCTCTCTCTTTCACCGAGTCACTCTGATGGCTCCACTGAAACTCTTTCTGTTGCTGCCATGGATGAAGTAGATGAAGTAGTCGGCTCAACTGTTCAAACAGCATCCATGAGAAACTCGCTGCTGTCTGATGACTCCTTTTCCACCAGCGACAGCAAAACTCTACAAGCTCTGGGGGATTTAATCGTTACAGATTTAGATCCAGAAAGTCGCTCGCTCTCAATTGACAGTGCGTATGGGACTCTCTCACCACAGTCTATGATCACAGAGCTCGACCTAAAGGGAGGCGTCTGCCAGAGTGAAGGAGAGGAAACCGATGctggagaagaagaagaagctttcgaggatgatgaagatgatgacgatgatgggGATGATTCAATAACCTGGAATGGCTCTCAGATTACTGTAAACGAGTCTTACATTTTAGATACAAACAGTGAGGAGCTCAACCGGAGGAATGATTTTTCTGGGATGGCTCAGGTTGTTGCTGGTTGTCGTTCGCAAACTTTGCGGCGCCGTTCTCCTGTTCAACCCCGTCCAGATTACCTGCAGCACTTTACTCTCAGGTCCCGTTCAGAAGATGACCTCCTTCAATGCCTGACCGACCCTCTTCTTCTTCGCCCTACAGGGAAAAACAACGTCAGCAAAAGTTTGACGCACCTCGCCAAACAAAAGTCTCACAGCGACGAGGTATTCCAAACGGACGAGGACGAGCTCCTCGAGGATGCCAAAacactgtccagcaaactcagcAACACTCTTCAGAGAGCGGAGGCCAGGCAGGTGCAGAGGACTCTCAGCTGCCCCAATGGACAGGCAGATTCTGAGGGTTCTGATGCTGAGACAGCGCCCCCTGGTGGAATGGAGGAAAAAAAGGATTTGGTGGTGGTCCAGCAGACTCATCAGCAGCATAAGAAGCTGACGGTGGCGCAGCTGCACAAGATACGAGCCACCATGGTGCTCAATTCAACACTGACTGCCTCGGAAGTTTAGTGTTTTAATGAATAAAGCGGATGCCATTAGCTGGTCTATTGGTGCGACTCAAACCAGGTCTTTGGTCCAAGACTTTCTTCAAGAAGACGTTCAACTCAGTGACTCTAACATATAAACCGGGAGAACATGGAGGAACTCCCAGTCAAAAGCCATGAGCATTAATCACTAATTTAATTTAGACTATATAAAGCAGAAGAGTCATACTGTACATACAGAGACGTACATTTTGTATAATGCCTGTCTGACAAAGAATAAATAAGACTcgatttaatcagtttttatttaacGATGCACCAGTCAGGGCTTTTGCAGAATTAAAGGgacagaaaaaaataagtataaGAATATAATCTCTAAAAGCACTCTGAATTGTCATTTCATTTGTCCTAAGGGCTTTCTTATTTCAATGCTAGATGATGTAGCCTCTCGAACACCTGAAATAGCTTGACTCTTTTAGGTTGTAAAGAATCACattagtgatttttttattttattttaagaacaaCTGTGGACTACTTTTGCTTGAAACGCCACAATAATCTACCTGCATGcattttgttgttgtattttttttttcagtgttctgTAAATATGATATTTATTGAACCTGCTTTGTTTTATAGAATATATCCTATTTGTTGATGCCTTTTGATTGTTATATGTCTCTTTTTGCTATTTGAATGGTTGGCACTGTCTCTGATTTTGTCTTTTGACATCAAAATAAGGGCTGAATCCAAGTCTTACCCTCGCGTTTTATTagtttacatacagtatgtaGCGTCAATATTTACAGGTGACAAATTTGCACAGTGCTTCTAAACGAAGGAAAAGAAACAGAGATAACACACAAACTTCAAATAAAATGCTTCAAATGCCACTGTTAAAATGTGTCTCTTTGTTTATTTACAAGTCTGAGTGCTTGGGTTTATAATGTTCTGACATTTCTGTTAAAGCATTCACATGTACACTAACAATAAATTTACATAATGCATGATGTTTCTTTTTTGGGTTACGTTCTGTGATCTTTACTTTAGAAAACAACATTTCTACACTGTTAGTGTTTTCTTGTTGAATCTacaataaattactgtaaattaatcacagcagaaatactgtatttacagcaCCAgaattgtatatctttactgtaaaatatacgcaaaatgtaaaatatgcagtaattttaaaatacagtaacatacttcATAAAAGTCCGacagtaaaattcagttcatattacagctaaatactgtgcAATTTATGACAGTTGTAACCTGTAGTTTGTAGTGCAGCCGTCTGCCAATAACTTTAATTTACATGTACAaaaccatttatcttgctgtatttacagtattgtatatctttactgtaaaaatatacagtaattttcacaatgccgCTTTAATATACAGTAACATAAATGTACCACAGGAAAATTCAATTCATATTACTGTTAGATACTGCAGGATTTATAAAAAATTGTTAACTGTGTAGTTTGTAGTGCAGCCAtccgccagtaacttactgtaaatcacagcaaaaatactgtatttacatgtatAGCACCATTTAACTtgctgtatttacagtattgtatgtcTTTACTGGAAAATATGCAGTAGTTCACAAtgacactttaaaatacagtaacatactgcattacTGTCCTATGataaaattcaattcataatacagttaaatactgtgtgatTTATGAAAATTGTTAACTGTAGTTAGTAGTGCAGCCGTCTGCCAGTAACTTACAGTAAgtcacagcaaaaatactgtgttTACATGTACTGCACTGTTTATCTAGCTGGATATGTGTTTACAGCATTGCatgtctttactgtaaaatatgcagtaattttcacaatgacACTTTAAAATGCAGTAACATACTTCATAAATTTCCTACAGTCAAATT

Function

GO:

id name namespace
GO:0007266 Rho protein signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0043534 blood vessel endothelial cell migration biological_process
GO:0043542 endothelial cell migration biological_process
GO:0030139 endocytic vesicle cellular_component
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0098793 presynapse cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-766 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within angiogenesis; blood vessel endothelial cell migration; and gastrulation. Predicted to be active in axon; endocytic vesicle; and plasma membrane. Is expressed in axial vasculature; dorsal aorta; and intersegmental vessel. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate C and distal spinal muscular atrophy type 4. Orthologous to human PLEKHG5 (pleckstrin homology and RhoGEF domain containing G5).

Ensembl:

ensembl_id ENSDART00000181252

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007896 lncRNA downstream 447561 24016063 ~ 24016795 (-) True XLOC_004132
TCONS_00007894 lncRNA downstream 447971 24015236 ~ 24016385 (-) False XLOC_004132
TCONS_00007889 lncRNA downstream 562995 23900000 ~ 23901361 (-) False XLOC_004131
TCONS_00007890 lncRNA downstream 563011 23900409 ~ 23901345 (-) True XLOC_004131
TCONS_00008794 lncRNA downstream 938745 23498265 ~ 23525611 (-) True XLOC_004128
TCONS_00008469 lncRNA upstream 183281 24709784 ~ 24712223 (-) False XLOC_004140
TCONS_00008470 lncRNA upstream 183281 24709784 ~ 24712551 (-) False XLOC_004140
TCONS_00008795 lncRNA upstream 184616 24711119 ~ 24714275 (-) False XLOC_004140
TCONS_00008471 lncRNA upstream 185301 24711804 ~ 24712922 (-) False XLOC_004140
TCONS_00008472 lncRNA upstream 186466 24712969 ~ 24714293 (-) True XLOC_004140
TCONS_00007902 mRNA downstream 5570 24429923 ~ 24458786 (-) True XLOC_004137
TCONS_00007900 mRNA downstream 36037 24360744 ~ 24428319 (-) False XLOC_004136
TCONS_00007901 mRNA downstream 36119 24360771 ~ 24428237 (-) True XLOC_004136
TCONS_00007899 mRNA downstream 116712 24345697 ~ 24347644 (-) True XLOC_004135
TCONS_00007898 mRNA downstream 272428 24187610 ~ 24191928 (-) True XLOC_004134
TCONS_00007911 mRNA upstream 145173 24671676 ~ 24681292 (-) True XLOC_004139
TCONS_00007914 mRNA upstream 655383 25181886 ~ 25213689 (-) False XLOC_004143
TCONS_00007915 mRNA upstream 656310 25182813 ~ 25213651 (-) False XLOC_004143
TCONS_00007918 mRNA upstream 724992 25251495 ~ 25257045 (-) False XLOC_004145
TCONS_00007919 mRNA upstream 725963 25252466 ~ 25257595 (-) True XLOC_004145
TCONS_00007888 other downstream 808878 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007873 other downstream 1305049 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007863 other downstream 1864801 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007852 other downstream 2711767 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 2879195 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007913 other upstream 441268 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007916 other upstream 678650 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007927 other upstream 949596 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007928 other upstream 1002054 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007931 other upstream 1143336 25669839 ~ 25669955 (-) True XLOC_004152

Expression Profile

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