XLOC_004137 (mxra8a)


Basic Information

Item Value
gene id XLOC_004137
gene name mxra8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24429923 ~ 24458786 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007902
CAAAGTTGCTGATGTCGCTGGTCGACTAAGAGCAAGCCTTCTTTTGCGGGACAAGTTTGTCAGGTGAACAAAGCCTGCTAAATCGACTTGAAACTTTAAGTTTTTAACACTACTAGAGATTGACCCGAAAGGATATCGGACATTATGAACTTGGCAGTGCCATTGTGCGCTCGAGCGCTTTTCTTGACTCAACttttgaCTTCATTTCTCTTCAGCCCTGCACTAGGTCAGAGTGATGGCAGTGGTGTGGTGGTGGCCATGTACAATATCAGTGCCCCTCAGGGCTCTCAGGCGGTACTGCAGTGTCATAGTCAGCGCATGGTGTGGACACAAGACAGGCTAAAAGACCGTCAGCGGGTCGTGCACTGGGATTTACTTCGAAGTGGACCAGATCATGCCATGGAAAGGGTTGTAGACatgttttctgctggagatcaaCGAATCTACAATGGCTACAACCAGGGACGTATTAGCATGTCCAAAACGGCTTTTAAAGATGGCAACTTCTCAATGGTAATTAAAGATGTTGTAACGAGTGACAAAGGGATCTACTCCTGTAACCTGCATCATCACTACTGTCACCTGTATGAGTCTGTCAAAATTCAGCTCAATGTCACCAAATCAGCTCGTAAGGAGAGGCGGTTTTGGGATGGTCAGAAGGCAGTGTATGTGGTTCTGGTGGGCACCACGGTGGTTCTCCCTTGTTTTAACCGCCGTCCCATCTGGACAGAGGGCAACAGTCAAGAGGATCAGCAACAGGTAGTGCACTGGGATCGTCAGCCTCCGGGGGTCCGGCACGACCGTGCAGATCGACTCATCGACCTGTACGCTTCCGGGGAGAGGCGTCATTATGGGCCACTGTTTGTTCAGCAGAAGATGAATATTTCGGCCACAGCATTCACACAGGGGGATTTCTCCCTCATCATCTCCAACATCCAGCTTCTAGATCAGGGGATATACTCCTGTCATCTGCACCATCACTACTGCGGCCTGCATGAGAGACGCATCTTCCAGCTTACTGTGAGCCCTCCGGTCCCTCAGGAGCCCACAGATGAACCTCAGTTTCTTCCCAATGAAGACCCAAACACCAATTTGGTGGAAGTGCCTCCACATGTTATCAACGTTATCCTATCAGAGCAAAGGACTCACTTCCTGCAGCAGCTGGGCTACATCCTGGCAACTCTCCTCCTATTGGCCCTCATCATGCTGGCTATCGTTCTCCTCACACGACACCGGAAAAAACAAGgCCAAGATTATGATCCACGGAAAGTTGAAAGCCCACCTTTACCGACGGTGACGTATGTAAGCCCCACGTCAAGTGTTAAGAAAGAATGTGAGCGTAGCTACTCAGACATGAGGCCAAGCATGCAGGAGGAAACAAAATTGGACTACAAGAACAATCTTCTGAAGGAAGCAGAAATGTCCAAAATATGCTCCCCAAAAGCCATTGACCTGGACAGAGAGATGGAAAAAGCTTCTTGGAAATGAGAGGTACTTTGCCACTGGCTGGTCCAGGGGCAGATTGAAAATGGAAGAAGAATGAAATGCTGAGAGGCAGGAGTGTGGCAAGGGAATAAGAGGAAAAGGAGAGAAGGACACAgctgtacaattttttttctgactcAAGATCCTCCATTGCTCTCGTGAAGCTTGCAGGAAGCAAAAGAGTCTCACCAGCAGTATTTCGGATGActgatatattaaaataatggcAAACGAACATTTTACAGCACTAATAATAACACAGTCTGCATTTTATTCCCTACATTTGTCACACGCTTTATGAGTGagaagtaaacacacacagactgatGTGTCCTGAGTGTCTGAATGTTTACAATGGGAGATTTACACTAACTGAGAACGAAACATGTCTGTGACACAAATATATAGCAAACTTAAAACGGTATAAACTTCTTATTTGATATGGAATCAAAATACCGTGCAACACTTTTACAGTTTTAAGGTGATTCATTTGGTAATTAAATCAGTATGGCCACAAATATTGCAAAAGCTATAGCTAAATCACATCTTTTTTTCTCAGCAGGTTTAAACTGTGCATTCTTAAAGCTGTAATTTATAAATGTAGCATTACGCAGACATATACACAAGGATAAAAGGGATAATTTACCCATAACTTAGCTCATAATTTAGCCCAGATTGaatctaaacattaaaaaagCTTAATAAATTATGTTCTAAATGTGAAATAAAGGATAAAAGggataatttacccaaaaataaaagttctgtaGTCAATATTGTTGTTTCTTGTCTGTGTTGTCATATAAAAGCTCCTATTTTAGCCCAGAAtgaatcaaaacattaaaaaagcttaataaattatgttataaatgttaaataaaggaTAAGATAAATAATTTACCCATAATTTAGCTTATAATTTAGCCCAGATTGATACTAAACATTAAAAGAGcttaaaaaattatgttataaATGCTAAATAAAGGATAAATGGGAtaatttactgaaaaataaaagttctgtGAATACTTACTGACTTACAAAACTctgggtttctttcttttgttaaacacaaaagaagatatttagaaaaatgttaaaaacatgtaAGCATTGATTTCTATACTTTCCTACTAGGGAAGTCAATTGTAAAGTCTAATTATTttcttatgtgttcaacagaagaaaacaacTTGTAAATGTTTGGAAACactcgagggagagtaaataatgagtaaaaattctttttttgcatgaactactcctttaattAAATCACACTCAATTATATTTTGCCTATAAAGCTGAATTTGGTCTGTTTGGTCATGTAAAAGCTCATAATTTAGCCCAGGTTGAATTAAAACATCAAAAAGGCTTAATAAATTATGTTATAAATGTTAAACCTACACTTTTACAGGTAAGCACAATTAATTTAGTCAAATTATTTCATAGTGCAAGTCAGGATAATATTGTGAACGCAtttaaatcttttcttttttgttcattttgatgACTGTTACCATTTAACAAGCTacatttctttcatttcatttatatCCTGTCACCAACAAATACTGTTATCATTTGTATATTTTCATATTAACTTTACAAGCCTTACTAACTTCTTTGTCACTGTTTGAATATTCTATTAGTTCAATGTATTTGCTTCCATGCTCTCTTCTAACCGCCAGCTTTGTGTTCATTAGCAAACAAGTTAGAGTGAAACTGATGCTAATCCATTAAGGTACAACATGAAGTCAATTTTATTTTAGCAGCTTGTACACGGCTGTGTATATTCATAGCCGTGAACATTTCTTCTCTGGGTTACTCAGATCTGTGTTATGCGTAGTTGTATCTTATTAAGGTGAAGCTATGAAGCAATGCTTATGCCTGTTATGATCATTTCATGATACTTTAACTgccctttgaatttctttaaaGCTTCCGTGTAAGAATTTCACAAGGTTGCAGGAGGAATTTTCTGGTTTGATGCTATATAATGGATGCTTGATTATTCTCATCCTGAAGCAGTTTTAGTATTGATGACCTTATTTTCGAGTTCGCTGCCATGTTCAAAGCAGaatcaaataaattcaaataaaagttAACCTCTGGATTA

Function

symbol description
mxra8a Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in fin; myotome; notochord; pectoral fin; and somite. Orthologous to human MXRA8 (matrix remodeling associated 8).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-671 Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in fin; myotome; notochord; pectoral fin; and somite. Orthologous to human MXRA8 (matrix remodeling associated 8).

Ensembl:

ensembl_id ENSDARG00000062222

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007902 True 3604 mRNA 0.39 10 24429923 24458786

Neighbor

gene id symbol gene type direction distance location
XLOC_004136 dvl1b coding downstream 1604 24360744 ~ 24428319 (-)
XLOC_004135 si:ch211-15p9.2 coding downstream 82279 24345697 ~ 24347644 (-)
XLOC_004134 sox12 coding downstream 237995 24187610 ~ 24191928 (-)
XLOC_004133 trib3 coding downstream 366727 24058530 ~ 24063196 (-)
XLOC_004132 chia.3 coding downstream 413110 24013769 ~ 24016813 (-)
XLOC_004138 plekhg5a coding upstream 5570 24464356 ~ 24538860 (-)
XLOC_004139 olfml3b coding upstream 212890 24671676 ~ 24681292 (-)
XLOC_004140 NA coding upstream 250998 24709784 ~ 24714293 (-)
XLOC_004141 CR628365.1 coding upstream 360479 24819265 ~ 24820001 (-)
XLOC_004142 CR628365.2 coding upstream 508985 24967771 ~ 24967887 (-)
XLOC_004063 CR854846.1 misc downstream 8302245 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 11738232 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 11808156 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 11838627 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 11916661 12512966 ~ 12513262 (-)
XLOC_004131 CR354444.1 non-coding downstream 528562 23900000 ~ 23901361 (-)
XLOC_004130 LO016980.1 non-coding downstream 774445 23655350 ~ 23655478 (-)
XLOC_004125 BX571675.2 non-coding downstream 1120605 23305755 ~ 23309318 (-)
XLOC_004123 CR555297.1 non-coding downstream 1270616 23159189 ~ 23159307 (-)
XLOC_004117 NA non-coding downstream 2335526 22089435 ~ 22094397 (-)
XLOC_004144 dre-mir-499 non-coding upstream 746367 25205153 ~ 25205243 (-)
XLOC_004147 NA non-coding upstream 909326 25368112 ~ 25408896 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02455495_02470846 NA coding CI01000306 null 2454988 ~ 2470846 (-)
bowfin (Amia calva) AMCG00002160 NA coding CM030136.1 CM030136.1 5919626 ~ 5938059 (+)