Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007845 |
| length | 5066 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 21 |
| gene id | XLOC_004112 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 21364551 ~ 21404358 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0018105 | peptidyl-serine phosphorylation | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko04620 | Toll-like receptor signaling pathway |
| ko04621 | NOD-like receptor signaling pathway |
| ko04622 | RIG-I-like receptor signaling pathway |
| ko04623 | Cytosolic DNA-sensing pathway |
| ko04625 | C-type lectin receptor signaling pathway |
| ko04657 | IL-17 signaling pathway |
| ko05207 | Chemical carcinogenesis - receptor activation |
| ko05161 | Hepatitis B |
| ko05160 | Hepatitis C |
| ko05171 | Coronavirus disease - COVID-19 |
| ko05164 | Influenza A |
| ko05162 | Measles |
| ko05168 | Herpes simplex virus 1 infection |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05169 | Epstein-Barr virus infection |
| ko05165 | Human papillomavirus infection |
| ko05417 | Lipid and atherosclerosis |
| ko01001 | Protein kinases |
| id | description |
|---|---|
| ZDB-GENE-040718-251 | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human IKBKE (inhibitor of nuclear factor kappa B kinase subunit epsilon). |
| ensembl_id | ENSDART00000129062 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008788 | lncRNA | downstream | 244578 | 21117620 ~ 21119973 (-) | True | XLOC_004108 |
| TCONS_00008787 | lncRNA | downstream | 411302 | 20952056 ~ 20953249 (-) | True | XLOC_004104 |
| TCONS_00007830 | lncRNA | downstream | 1268712 | 20092444 ~ 20095839 (-) | False | XLOC_004102 |
| TCONS_00007831 | lncRNA | downstream | 1269070 | 20094620 ~ 20095481 (-) | True | XLOC_004102 |
| TCONS_00008786 | lncRNA | downstream | 2273450 | 19088414 ~ 19091101 (-) | True | XLOC_004093 |
| TCONS_00008789 | lncRNA | upstream | 489244 | 21893602 ~ 21906011 (-) | False | XLOC_004116 |
| TCONS_00008790 | lncRNA | upstream | 489244 | 21893602 ~ 21906039 (-) | False | XLOC_004116 |
| TCONS_00008791 | lncRNA | upstream | 489244 | 21893602 ~ 21906060 (-) | True | XLOC_004116 |
| TCONS_00008792 | lncRNA | upstream | 685077 | 22089435 ~ 22094397 (-) | True | XLOC_004117 |
| TCONS_00008467 | lncRNA | upstream | 1500841 | 22905199 ~ 22905900 (-) | False | XLOC_004121 |
| TCONS_00007840 | mRNA | downstream | 717 | 21278687 ~ 21363834 (-) | False | XLOC_004111 |
| TCONS_00007843 | mRNA | downstream | 11608 | 21284399 ~ 21352943 (-) | False | XLOC_004111 |
| TCONS_00007842 | mRNA | downstream | 11880 | 21283064 ~ 21352671 (-) | False | XLOC_004111 |
| TCONS_00007844 | mRNA | downstream | 60099 | 21284578 ~ 21304452 (-) | True | XLOC_004111 |
| TCONS_00007841 | mRNA | downstream | 60605 | 21283064 ~ 21303946 (-) | False | XLOC_004111 |
| TCONS_00007847 | mRNA | upstream | 1339 | 21405697 ~ 21528056 (-) | False | XLOC_004113 |
| TCONS_00007848 | mRNA | upstream | 1339 | 21405697 ~ 21586157 (-) | False | XLOC_004113 |
| TCONS_00007849 | mRNA | upstream | 2328 | 21406686 ~ 21585176 (-) | False | XLOC_004113 |
| TCONS_00007851 | mRNA | upstream | 178202 | 21582560 ~ 21612310 (-) | True | XLOC_004114 |
| TCONS_00007854 | mRNA | upstream | 883596 | 22287954 ~ 22361306 (-) | False | XLOC_004118 |
| TCONS_00007815 | other | downstream | 1948236 | 19416178 ~ 19416315 (-) | True | XLOC_004096 |
| TCONS_00007814 | other | downstream | 2183996 | 19180452 ~ 19180555 (-) | True | XLOC_004095 |
| TCONS_00007803 | other | downstream | 2760116 | 18591999 ~ 18604435 (-) | True | XLOC_004089 |
| TCONS_00007777 | other | downstream | 3455869 | 17906902 ~ 17908682 (-) | True | XLOC_004078 |
| TCONS_00007763 | other | downstream | 4720038 | 16644397 ~ 16644513 (-) | True | XLOC_004067 |
| TCONS_00007850 | other | upstream | 175568 | 21579926 ~ 21585161 (-) | True | XLOC_004113 |
| TCONS_00007852 | other | upstream | 348117 | 21752475 ~ 21752589 (-) | True | XLOC_004115 |
| TCONS_00007863 | other | upstream | 1192756 | 22597114 ~ 22599555 (-) | True | XLOC_004120 |
| TCONS_00007873 | other | upstream | 1754831 | 23159189 ~ 23159307 (-) | True | XLOC_004123 |
| TCONS_00007888 | other | upstream | 2250992 | 23655350 ~ 23655478 (-) | True | XLOC_004130 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000058_02964886_02978501.mRNA | True | 2640 | mRNA | 0.46 | 20 | CI01000058 | 2964886 ~ 2978895 (+) |
