RNA id: TCONS_00008788


Basic Information

Item Value
RNA id TCONS_00008788
length 963
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_004108
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21117620 ~ 21119973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCGTACACATGCGAAGGCGGTACTTATCCCATCTTTTCTCAAAAACTACTGGtccaaaagacatcaatcaaGATTTGGATTGTGCAATAGGTATTCCCCCAGAGAATGAACACACAAGCATGCTTATCTGGCTTTCAATGACGGAGGAGTCGTCGTTTGAGTGCGCTGAATAGCAAAAAGTGTACGGaacatggttagtctacgttaAATCTGTGATTACAGCAACTAATAGACATTATGTTATACAGGAATATACTGCTGTTATATGACCCACAAGAGATTTAGCTACTGTTTGATGTCAATCCACAGGGGTCACCTCCAGTCCGAGGACAGAAAGCAACATCCTGTCTTTAGAGGAAATCCTTTTCTGGAACAGTAAGATGCACCTCATCATACAGCAGTTTcagtttcagcatttttttttcattagtgtAACTGTGTTTAGTTAAGGTGTCAAAGCCGCTGTTCTCAGAGGCGTTCTGCAATGACGCACATGAGAGTGCTTGATATGAGGCACGTCGACCAGCATATAGGAtgaagcttttgtggctcgtgcCTTTGTGGGTGCCGATACCCACATGACTGCGACTGTGTTTCAAAACAAAACGGTATGCATCTGCTGCAAGCGTACCTATGGATGTTTTGCAGCATAGAAGCTCCTCCCTTCCTGTCGCTGCATGGAACACTGTGTGCATGTCTTGTTTTCAATGACCAACATTATGAAATCTTAAATCTTTGTATGCTCAGTTGATTTgatctgcaaaataaaaaatgttacaaaaagtgTAAACGCAAAAACATTACTGTTTGGTGATAGGtggattttaaaaacaaacaaacacgtgtGTAAAGGATCAACATGGAtgtttcattttccttcaacgtagtctctattttagaggttgccactgtgaaatgaactgccaactattccagcacatgttttacacagtggatgct

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0061053 somite development biological_process
GO:0061061 muscle structure development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008787 lncRNA downstream 164371 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00007830 lncRNA downstream 1021781 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 1022139 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 2026519 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008465 lncRNA downstream 2265251 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00008789 lncRNA upstream 773629 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008790 lncRNA upstream 773629 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008791 lncRNA upstream 773629 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008792 lncRNA upstream 969462 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008467 lncRNA upstream 1785226 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00007836 mRNA downstream 85847 21025895 ~ 21031773 (-) False XLOC_004107
TCONS_00007837 mRNA downstream 87550 21026691 ~ 21030070 (-) True XLOC_004107
TCONS_00007835 mRNA downstream 103048 20994026 ~ 21014572 (-) True XLOC_004106
TCONS_00007834 mRNA downstream 129382 20978310 ~ 20988238 (-) True XLOC_004103
TCONS_00007832 mRNA downstream 130242 20887446 ~ 20987378 (-) False XLOC_004103
TCONS_00007838 mRNA upstream 34705 21154678 ~ 21218172 (-) True XLOC_004109
TCONS_00007839 mRNA upstream 139383 21259356 ~ 21267486 (-) True XLOC_004110
TCONS_00007840 mRNA upstream 158714 21278687 ~ 21363834 (-) False XLOC_004111
TCONS_00007841 mRNA upstream 163091 21283064 ~ 21303946 (-) False XLOC_004111
TCONS_00007842 mRNA upstream 163091 21283064 ~ 21352671 (-) False XLOC_004111
TCONS_00007815 other downstream 1701305 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 1937065 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 2513185 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 3208938 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 4473107 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 459953 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 632502 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 1477141 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 2039216 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 2535377 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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