RNA id: TCONS_00007839


Basic Information

Item Value
RNA id TCONS_00007839
length 4871
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_004110
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21259356 ~ 21267486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCCCATCCAAAACACTCCGACGGTTTGACTGATACGTTTGCCAGTGTTCGAGTGCGACAATGAGTTGATTTAATCTCTTTGTTATTAACAATAAGAGCAGGTTAGTCCTCTACAACCCGGAAAAGGAGAGACGCTAGCCTGAGCTTTAGCTGCCCGCTGGACCGTGCGCTCGGGCTGGGATGAGTCTTCTGGTCAAACCGACAACACGACATTTAAGAGAGGGGAAGAGTGGAGGAGGACGACATCATTTTAATGTCTGGACTCAGTCTCACTTCGTTTTAGAGAGACGGAAAACGCTTTTGTGTTTTTTGCAACTTTGAgtcttcatcatcctcatcttcgTCATCGAGGACGACTGCTTCTCACCCTccattatttgttgtttttatcctGTGAATTTCTGCACTTCTAGCGTCATGCAGGAAATATAGTCGCATCTATTACTGCTTCTCCATGCTTGTAAATACAGGTGGTCAAAGTGATAAGCCTCACGAAAACAGCTTAAAGGGGATCATGGCTGAACCCTGCAGCACTGTGTAGTCGTCGTCAATCTAGCTTGTGGAGATCTGACAACAAGCTTCCCCACGGATATGAGACTTTGTTGATATCTTGCTAGTCTTGCTAGAAGGACTTCGCGTCGTTGATTTGGATGGATCTTGCTGTAGTGAAAGtatttttcagaagaaaaataattatttgatgcTGATTGCATGCAACCATGATGATATTAAGCAGAAAACCAGATGGCCCCGTAACTGCAGCTCGCCACGGGGATGGTCTGTATGACTCCTACATGCGCACTGATCACATAGTGAACCAGGACGCTGATGTGAATGGACAGAGTCCCTCAGGACTGCCCCCTCTCCCCAAACACACTgGTGTCATCAAGCCTACAATGAAGGATCACCAAGCAATCCGGGGAGGACAGATGAAGGTGAAGTATGTTTACGAGGACTCCTACAACCGCAAACTCAATGGTGTGAGCCAGCACAATGGCACAAGCCAAGTACCAGCAAAGCCCCCACCTGCAATTTCCAAAGAGAGAAGCGTGGACAGCAACAGCTCTGTGAAATCCTCAGAGAGCTCAACAAAAGTCACAAAGCTGGGCAGCCCAATGACCCCAGAACAAGCTCTCAAGCAACACCGGCAGCAAATGACTACCTTGGAGCAGCAGGAGATCCACAACTATTCTGAGATCTACTTCCTGGGACCAAATGCCAAGAAAAGGCAGGCAGTAGCAGGCGGCACTAACAACAGTGGATATGATGATGACCAGGGGGGATACATCCACGTACCTCATGACCACCTTGCCTATCGCTATGAGTTCCTCAAGGTGATTGGCAAAGGTAGTTTTGGACAAGTGGCAAAGGTTTACGACCACAAGTTGCAGCAGCATGTCGCCCTGAAGATTGTGCGCAATGAGAAGCGCTTCCATCGGCAAGCTGCTGAGGAGATCCGAATTCTGGAGCACCTGAAGAAGCAAGACAAGACAGGCAGCATGAACGTAGTTCACATGTTGGAAAATTTTACCTTCCGCAATCACATATGCATGACTTTTGAGCTGCTCAGTATGAATCTGTACGAGCTCATCAAACGCAACAAGTTCCAGGGTTTCAGTCTTCCGCTGGTACGCAAGTTTGCGCACTCTATTCTCCAATGCTTGGAAGCTCTCCATCGCCATAAGATCATCCACTGTGACCTAAAACCAGAGAATATCTTGCTGAAGCAGCAAGGCAGAAGTGGGATAAAAGTCATCGACTTTGGTTCCAGCTGTTTTGATCACCAGCGTGTTTACACGTACATTCAATCTCGGTTCTACCGAGCACCTGAAGTCATCTTGGGATCGCGATATGGTATGCCTATAGACATGTGGAGCTTTGGTTGCATTCTGGCAGAGCTTCTTACCGGATACCCATTGTTTCCGGGTGAGGATGAAGGCGACCAGCTGGCTTGCATGATGGAGCTATTGGGTATGCCACCTTCGAAACTCCTGGAACAAGCCAAGCGTGCCAAGAACTTCATCAGCTCCAAAGGCCATCCACGCTACTGCACAGTTAGCACACTTAGCAATGGCACTATAGTTCTCAATGGGAGCCGTTCTCGCAGAGGAAAAATGCGAGGTGCCCCTGGGAGCAAGGAATGGGGAACGGCCCTCAAGGGCTGTGAGGATGCCACATTCATTGACTTTCTGAAGAAATGTCTGGATTGGGACCCTAGTACTCGTATGACACCAGTTCAGGCTTTAAGACATCCATGGCTCTACAAGAGACTGCCCAAGCCTGCACCTGGTGGTGAGAAGACTGTGCTACCCAAACGGATCTCAGAGCACAGCACCTCCTTTCCTACCATCATCTCCAAGGTACCCCCCGTCATGGGCTCAACCAACAACAAACTGCGGACCACCATGATGGGGGACTCCACTGGAAGTATACCTTTTCGCACAGTGCTGCCGAAGCTTGTTTCATAGAGATTCCTTAGCTTTTCAGGGATAAAGACATATTTGTAGCAGTTTATagaagtggatttttttttttgtgttggttGGTTCATTTTCTAAAAGAGTGTCAACTCACCATTTGGATTTTCAATGAagtgtaacaaacaaacaattttttacaaatatactgTTTTTATCAAATGGCCTTCAAAGTGTGAAATTCAGGGCTATTTTTTTACACTTTGCTTTCGAATCGAGTGCTGTTGATTGAGGTGGGTGAATTTATGATGCTGACTGCCCCTTGTCCTGTCCTTTTTGAAGTTTTCACAGCTTCTGTTCAGACAATTACAACTTTAGCATCTCTAAGGGCTGTTTTGTGAGTTTGTGACATACTTTATAAGGGCTTAGAATGAGTTTTTGAATTCACTTACAGCAGACTCTGATccttaattaaaaaataagtcgGTTTGAAGCTCATGTCAAAATTGATTTTGATATAATTCAGATGAGCATgtttctaatttaattttattttaatgttatcctCCTTAGTCACTTGCGTCCCAGCAAGAGGTCAAACTCTTTGTTGTTGTCCACAAATGTTATGTTTTTGAGAAGTTGAGCATTTTGATAAGTTGTTCTAGAACAAGATTTGAGAAAGTTAAATTTTGAACATGGTAGTCCCAATTCCTGGGAAAAATCGGCACTGTTCCACGGTTGTTGTAGGAGCCTGTTTTTATCAGTGCTATTTTGAAAAGTCTTGGTCAGGTTTCGCCTGAAGGCAGTAGGCATCACATGTTTGTCTGTACATGGTAGTATACATTTCCTCGAAGCTCATGAAACACTCCAGTGTTTGCTCTGGGTGATGATAGATACCAAACAGCTAGCATGAGGATTTTTTAAACATGATCAGAGTAGTAGATACCAAAGGGTGGTTGATGTGCATCATCTGGGATTCAGTTTGTACGACGATATAGTGTTTAGTTGTTGCTTTGTTTGCAACCGCAGCAACTATTCTTGTCATTTATTTGTATGAGGGAAGATAGAGGAAAGAGATAATGCAGGGTAAATTCCCCTCCCCCAAAGCTCACCATCAGGACACAGAGTAGTTGATTTCCAGTGACTCTGGTTGATTGTGTAGCCTGGAATATCTCTTTATAGTGACCTATTTTGTTCCCTTTCGCTCTGAGGTTTACAGGAGGTTCCTGCTTTTTATACAGTCAAGCATGCAGCACGTTCACCCACCCTCAATGGCGCTAACCAGGGTCTGCACTTTGAGTATTTGTCCATGTGAACCTTTTAGGACAAGCAATATATGCATTTGGTTGTTTGAAAAGTTGTCGTATGATCTAATGTATGTTTATTGACACTGCCTCACTCTTTCTAGCTGTGAATTGAGCACTGAATGCTTAGAAGCTAATTGTTTTAAGGTAAGACATTAATCTGCTGAAGGACTGTGAAAATGAACAGCGCTTAACCCATTGGCCCTGACAGGTGTGTGTGCAAAGCATCTGTGCACTACCTGGACTAAGGTAAGAATGAGGATACCATGACAAGTCATTGGAAAAACATCACGTCTTTTCACAACTCTTTCTCAGGTTCAAACTCCTTTTGAGGGTTTAATGGACATTTATTTATGATTCCACACACCTAAAGGGTAGAAAGATGATCTAGAGTTCAAGTTTCATAAAAATCAAATGGCTTTATAGATGTTGGTGCTCAAATTAGGACTATAAACTCCAGGTCTCCATTAGTTTCCAATAATAGTCTTTTCTTTGATTTCATATTCTCCCAGTTCAGTTGTCTATTTCAGGGAAAGTGTCCTGGTGAAAGTGGTTTAGTGTTGTTTCTACCTCTTTCTTGCTTGTTAAATCCATCTTGTATGCTCTGGAGAGATCTCTACTACACAAATAGCAGCATCTCGCTACACCGCTTTCTACTTTGCTTCAGTGTTCATGCCTGTTTGCATCATCATGAATTTTTCACCAAAGCACCCGTTCACTTGGCTGTCTCTCTATTTTTCGTCTCGCTGCGTGAACCCCTCGGTTCATGGGAATCTAGTCTTGTGCCTTTTAACTGAATACACTTGACTAAATCATCAAGGCTCAGCACGGGATGACTAATGTTTCTCTTCCAGCTTTAATGGTCAGGGTTTTTATATTGCTTTTATTTCACCCTTTTATAGAGTTTTTACTGTTACTCGTATTTTAAAGAGAAGTGAAAGAGGTAATGATGTCATTTTTCTATATGTTGACTGTTGGCCATGTGGTTCAGAGCATGATAATCACAGGACGCATGAAAATAAGCGATAAAGTGCAAGGGGGGAAAACGAGAAGATTTAAGTAACTAAGTTTGTGTGAAAGTAACCAAATGATCTTgtattagtttctttttttttaaaaagagaaataaaaaaatggattCACTATTGA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0055001 muscle cell development biological_process
GO:0035617 stress granule disassembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:1902751 positive regulation of cell cycle G2/M phase transition biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-31 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within muscle cell development. Predicted to be active in cytoplasm; cytoskeleton; and nucleus. Is expressed in adaxial cell and somite. Orthologous to human DYRK3 (dual specificity tyrosine phosphorylation regulated kinase 3).

Ensembl:

ensembl_id ENSDART00000128681

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008788 lncRNA downstream 139383 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008787 lncRNA downstream 306107 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00007830 lncRNA downstream 1163517 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 1163875 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 2168255 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008789 lncRNA upstream 626116 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008790 lncRNA upstream 626116 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008791 lncRNA upstream 626116 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008792 lncRNA upstream 821949 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008467 lncRNA upstream 1637713 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00007838 mRNA downstream 41184 21154678 ~ 21218172 (-) True XLOC_004109
TCONS_00007836 mRNA downstream 227583 21025895 ~ 21031773 (-) False XLOC_004107
TCONS_00007837 mRNA downstream 229286 21026691 ~ 21030070 (-) True XLOC_004107
TCONS_00007835 mRNA downstream 244784 20994026 ~ 21014572 (-) True XLOC_004106
TCONS_00007834 mRNA downstream 271118 20978310 ~ 20988238 (-) True XLOC_004103
TCONS_00007840 mRNA upstream 11201 21278687 ~ 21363834 (-) False XLOC_004111
TCONS_00007841 mRNA upstream 15578 21283064 ~ 21303946 (-) False XLOC_004111
TCONS_00007842 mRNA upstream 15578 21283064 ~ 21352671 (-) False XLOC_004111
TCONS_00007843 mRNA upstream 16913 21284399 ~ 21352943 (-) False XLOC_004111
TCONS_00007844 mRNA upstream 17092 21284578 ~ 21304452 (-) True XLOC_004111
TCONS_00007815 other downstream 1843041 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 2078801 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 2654921 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 3350674 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 4614843 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 312440 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 484989 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 1329628 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 1891703 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 2387864 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_03034418_03038200.mRNA True 1850 mRNA 0.49 2 CI01000058 3034418 ~ 3038344 (+)