RNA id: TCONS_00007841


Basic Information

Item Value
RNA id TCONS_00007841
length 786
RNA type mRNA
GC content 0.51
exon number 5
gene id XLOC_004111
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21278687 ~ 21363834 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACCGGCAGCAATAGCATGAGCAGTGGATACTGCAGCCTGGATGAGGAGAGCGACGATTTCTCCTTCTTCACCGCCAAAACCTCATTCTTCCGGCGTCCACAGGCAAAACAAGTAGAAAAGAATGTCAcaaaagaggaagaggaagacAAGCCTATATCTCTCACAGAAGAAGAGATTAAAGCAAAAATAGACGACTACAACTCCAAAGTGACGGAGAATGGGATGAAATTAAGCCCAGACGGCACATACACTGGTTTCATCAAGGTTCATTTGAAGTTGCGCAGGCCCGTGACTGTACTTTCTGTGGACGGGAAGTTACCAGGTCCGTGTTCCTCATCTGATGGTTCGGATAACCGCACGTCCTTCTACCTGCCCTCCGATGCCGTCAAACAGCTCCACATCAGCAGCACCACCACGGTCAGAGAGGTCATTCAGGGCCTGCTGAAGAAGTTCATGGTACAGGACAATCCACGCAAGTTTGCCCTCTGTCGCCTGACCCGCCGGGACAGCCAAGATCTTTTCCAGAAGTTGCCCTTATCAGACTGCCCGCTCTACTTGAGACTGTTAGCCGGTCCAGATCTAGACAATCTGAGTTTTGTACTCAAGGAAAACGAGACTGGAGAGGTGGAGTGGCACGCGTTCTCAGTACCGGAGCTGCAGAACTTCCTGATCATCCTGGAGAAGGAGGAGAAGGAACGCATGCGGCAGGTGGAGCAGCGCTACTCCACTTACAGAGAGAAACTCCTACAGGCTCTGGGTGAGGTGGAGAGCAAACCAGGCTAA

Function

GO: NA

KEGG:

id description
ko04014 Ras signaling pathway
ko04015 Rap1 signaling pathway
ko04218 Cellular senescence
ko04670 Leukocyte transendothelial migration
ko05200 Pathways in cancer
ko05223 Non-small cell lung cancer

Ensembl:

ensembl_id ENSDART00000185786

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008788 lncRNA downstream 163091 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008787 lncRNA downstream 329815 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00007830 lncRNA downstream 1187225 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 1187583 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 2191963 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008789 lncRNA upstream 589656 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008790 lncRNA upstream 589656 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008791 lncRNA upstream 589656 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008792 lncRNA upstream 785489 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008467 lncRNA upstream 1601253 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00007839 mRNA downstream 15578 21259356 ~ 21267486 (-) True XLOC_004110
TCONS_00007838 mRNA downstream 64892 21154678 ~ 21218172 (-) True XLOC_004109
TCONS_00007836 mRNA downstream 251291 21025895 ~ 21031773 (-) False XLOC_004107
TCONS_00007837 mRNA downstream 252994 21026691 ~ 21030070 (-) True XLOC_004107
TCONS_00007835 mRNA downstream 268492 20994026 ~ 21014572 (-) True XLOC_004106
TCONS_00007845 mRNA upstream 60605 21364551 ~ 21404358 (-) False XLOC_004112
TCONS_00007846 mRNA upstream 62652 21366598 ~ 21404044 (-) True XLOC_004112
TCONS_00007847 mRNA upstream 101751 21405697 ~ 21528056 (-) False XLOC_004113
TCONS_00007848 mRNA upstream 101751 21405697 ~ 21586157 (-) False XLOC_004113
TCONS_00007849 mRNA upstream 102740 21406686 ~ 21585176 (-) False XLOC_004113
TCONS_00007815 other downstream 1866749 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 2102509 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 2678629 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 3374382 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 4638551 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 275980 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 448529 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 1293168 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 1855243 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 2351404 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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