RNA id: TCONS_00007835


Basic Information

Item Value
RNA id TCONS_00007835
length 2000
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_004106
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20994026 ~ 21014572 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTACCTGTTGCTCTTGAGACTGTGCTTAAGTATGAAGGATTACAGCTTGAAGAACATTAGAGGAGTACTATTCAAAAACTCAGTTGGAGATGAACAGGATAAAGATAAATCTGACAAGGCTGAACATGTTGTACAGAATGATGAAAACTCTGacaggggaaactggagcagtaAAAGAGAGTACATGCTGTCTATGATTGGTTACGCTGTTGGTCTTGGCAATGTTTGGAGATTTCCTTACTTGGCTTACAAACATGGAGGAGGGGCCTTCCTCATCCCGTACACTATCATGCTGGCTGTTTCTGGTCTGCCCTTGTTCTTCATGGAAAGCTCTTTTGGACAGTTCTGCAGTCAAGGCCCCATCAATGTGTGGAAAGCTGTGCCCATACTGCAAGGTGTTGGCATCACGATGATGCTGGTTAGCACTTTTGTGGCGATCTACTATAATGTGATCATTGCATACAGTATCTACTACCTCTTTGCATCTTTTCAAGATCCTCTGCCCTGGAGCATTAAGAACTGCAATACAACAGCCTCCAACATTTCTACTGCAGCAGTGAATGTGTCCTGCGGTCAAATCTCAGGCCAGAGCCTCAGTGAAAAATACTGGGATGAGGTGGCTCTTCAGCGCAGTAGCAGTATGGATGAGACAGGGCCGGTGGTCTGGCATCTGGCTCTTTGTCTTCTGCTCTCCTGGATACTAGTGGGAGCAGCTCTTTTCAAAGGCATCAAGTCCTCTGGAAAGGTGGTGTATTTCACAGCTACTTTCCCTTACATCGTGCTTTTGATCCTGTTGATTCGTGGTGCAACTCTCGAAGGTGCGAAAGACGGCATCGAGTTTTACATCGGCTCACAGTCTAACCTCACCAAACTGGCTGAGGCTGAGGTTTGGAAAGATGCAGCTACTCAGATCTTCTTTTCTCTGTCCATCGCCTGGGGTGGTCTGATGGCTCTGTCGTCTTACAATAAGTTTTACAATAACTGCTACCAAGACTCTATTGTGGTCTGTGTTACAAACTGCGGCACCAGCATCTTTGCTGGTTTTGCCATCTTTTCCGTACTTGGACACATGGCGCATGTCTATCAGAGACCAGTGTCAGAAGTTGCAGATGCTGGTTTTGCACTGGCCTTCATTGCATACCCTGATGCTCTCTCTAAGCTGCCCATTTCACCCCTGTGGTCAATCCTGTTCTTTTTTATGCTTATTACTCTCGGCTTGGATTCCCAGTTTGCAGGAATAGAGGTGATCAGCAcctgcctcctggatgcctatcCTGAAGTTTTGAAATCCAAACGAGGTCTTGTTACAACAGCGGTCTGCATTATTCTCTTTCTGCTCGGCTTGCCATGCGTCACCAGGGCAGGAATATACTGGGTGAATTTAATTGACACATTTAGTGCCGGATGGATTCTCCTGGTTGCTGGATTACTAGAGGTCTTGGGTTTGTGCATCCTGTATGGTGGTAATCGCTTCATCAAGGACATTGAGATGATGATTGGGACCAAGAGCTCCCTCTTCTGGTTGTGGTGGAGAGCTTGCTGGTTTTTCATCACTCCAGTGGTTTTGTCTATTATTCTGATATGGTCTTTGTATACCTTTACATCCCCGACATATAGCTCAGTTGCATATCCTGATTGGGGCATTTCTCTGGGCTGGTGTATCACTGCATTTAGCCTCATGTGGATTCCTATTGTTGCTGTCTGGAAAGTGTGTAAAGCGAGAGGAGGACTGTGGCAGCGTATCAAATCTGCCTGCTCTCCTACAGAAGACTGGGGTCCTTACCTGGAGTGTCACAGAGGGGAGCGCTACGGTACCAGAGGAGAGACTGATCCAAATATATTTGTAATCTCAAACAAAGTCTCTACtagattgtaaaatattttagtttgaacAAGTATTTGTACATATATTGTATACAAATCTAGCACACTTGTCTCTTTCTAATTTAATACACAAgataaacatgttttgtaaatACACATAATCCTTTTGTTTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-130411-2 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in obesity. Orthologous to human SLC6A14 (solute carrier family 6 member 14).

Ensembl:

ensembl_id ENSDART00000042220

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008787 lncRNA downstream 40777 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00007830 lncRNA downstream 898187 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 898545 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 1902925 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008784 lncRNA downstream 2141956 18850270 ~ 18852070 (-) True XLOC_004092
TCONS_00008788 lncRNA upstream 103048 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008789 lncRNA upstream 879030 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008790 lncRNA upstream 879030 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008791 lncRNA upstream 879030 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008792 lncRNA upstream 1074863 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00007834 mRNA downstream 5788 20978310 ~ 20988238 (-) True XLOC_004103
TCONS_00007832 mRNA downstream 6648 20887446 ~ 20987378 (-) False XLOC_004103
TCONS_00007833 mRNA downstream 37717 20953926 ~ 20956309 (-) True XLOC_004105
TCONS_00007829 mRNA downstream 898008 20091255 ~ 20096018 (-) False XLOC_004102
TCONS_00007826 mRNA downstream 922119 20017328 ~ 20071907 (-) False XLOC_004101
TCONS_00007836 mRNA upstream 11323 21025895 ~ 21031773 (-) False XLOC_004107
TCONS_00007837 mRNA upstream 12119 21026691 ~ 21030070 (-) True XLOC_004107
TCONS_00007838 mRNA upstream 140106 21154678 ~ 21218172 (-) True XLOC_004109
TCONS_00007839 mRNA upstream 244784 21259356 ~ 21267486 (-) True XLOC_004110
TCONS_00007840 mRNA upstream 264115 21278687 ~ 21363834 (-) False XLOC_004111
TCONS_00007815 other downstream 1577711 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 1813471 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 2389591 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 3085344 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 4349513 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 565354 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 737903 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 1582542 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 2144617 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 2640778 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_03181624_03193630.mRNA True 4361 mRNA 0.41 14 CI01000058 3181420 ~ 3195924 (+)