RNA id: TCONS_00007832


Basic Information

Item Value
RNA id TCONS_00007832
length 3560
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_004103
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20887446 ~ 20988238 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTAACTACTTTGATCGGGACGTCCACAGTGCAAACTTTGAACGGAGGCAATGCAATGGATCCGCACACTGAAAGCGGCACTCCAGTGTCCAGTggtccatcatcatcatcgtcagaCGACGCTTCAACTTCTGTCCCGGTTGTTAATAACGGGCCCGGGGTGGCGAAAGGACTCGGAAACGTCACGGTCGCCCCAAGCCCAAACACAGTGATACAGTCTTCTTTCGGGACTCCTCCAGCCGCAGCATCCAGTGCAGGACCCTTAGTGACAGTTGTCAGGCCATCTATGCAAACTGCTGGAGCAGGTTTAACTATTAACGGAAGTAATAATAATACCACCATTTCTGTAGCCAATGTAGCGACCCCGGGAATaactactacttcaactactactactagttCTACTACTACAACGACCCCTCTTTTGTTGAACCAGACTTCTGCACCTGTCACCGCGAGCAAGTCCGAGTCTCCTAAAACTATCATCCAGCCCGCAGGCAGCATGACTGTCGGCCCTGCAGTGGCCAAGGGGGCTGTTTTGCAGGGGGTTGCGAGAACCGCAGCTCCGGCAACTGTTGCAGCAGCATCAGCATCATCTAGCCCGACCATCAGGGCCAGCGCGCCACAGGTGTTAGCGCCCCGACTCCCTCAGAGCAGCCCGGGCCAGAACATCCAGAATATCCAGCTACCTCCAGGTATGGTGTTGGTGCGCAGTGACAGTGGTCAGCTGCTGATGATTCCACAGCAGATGTTGGCACAATTGCAGGCCCAGACTCAGTCCGCCCGCCCTGCTGCCCCCGCCAGCACCACCCCTGCGCAGATCACTCCTGCTCAGGCACCTGGAACTCCTCTTATGGCCCGACAGGTGACCCCTACCACCATAATAAAGCAGGGCTCTCATACAGCCAGCAGCACAGCCACTACCACACTCCAGAGACCACCTGTACAGCAGGCCTCCTCTGTGGGTCCAGTGCTGTCAGTGCAGGCAGGAGCCGCCCAGAGGACTGTGACTGCTGCCACAGGGACCACCGTCTCCTCAGCAACGGAGACAATGGAGAATGTAAAGAAATGTAGGAACTTCTTGTCTACGCTGATAAAGCTAGCCACTAGCGGTAAGCAGTCGTCAGAGACTGTCGCCAACGTTAAAGAGCTGGTCAAGAACCTGCTGgAAGGGAAGATTGAAGCAGAGGAGTTCACCAGCAGGCTCTACAAAGAGCTCAACTCCTCTCCTCAGCCTTATCTAGTGCCTTTCCTTAAGAGGAGTCTTCCAGCTCTGCGACAGCTCACTCCAGACTCTACGGCCTTCATCCAGCAGAGCCAGGCCCTCCACTCACCCACTGTGGTGTTGACCAGTCCCAACACTGCTGGAGGCACCACCGCAGCCCCTCGTACACTCACCCAGCCAGCCCTCAGCAACTCCAGTCAGACTGCCTCTCTGGTGTTGCAGTCTCCGCAACAGGGGGCAATAGTGAAGCCCCCTCAGGTCACCCTAACCACCACCCCGATGGTCACGCTCAGGGGTCAACCTCACAGCCACATAGTAGTGGGTCAGCCTCAGTTACAGCTCAAACAGATCCAGACAGTGCCACTGAAGCAGGGTGTGATGGCCAGCACTAAACTGGTTCATAGCTCTGTCAATTTAGTGGCTGCTCAAAAGAATAAACCCAAGGATGGAGCTGGAGGAACTTTcagGGATGATGACGACATAAATGACGTGGCCTCAATGGCGGGCGTTAATCTTTCTGAGGAGAGCGCTCGAATCCTGGCCACAAACTCAGAGCTGGTCGGTGCAGTTACGCGGTCCTGCAAGGACGAAGCTTTCCTCTCTGCCAGTATGCTACAGCACAAGATACTAGAGATAGGCCAAAGGTTTGGAGTGACAGATCTGGGTCCCGAAGTGGTGAACATCGTCTCTCACGCCACTCAACAAAGACTGCAAAACCTACTAGAGAAAGTTTCATTGATCGCCCAGCAAAAAAACATGACTTACAAGGAGGATAGTCGGTACGAGCAGGTGGAGGATGTTCGCGCTCAGCTCAAGTTCTTTGAGCAACTCGACCAGTTGGAGAAACAAAAGAAAGAGGAACAGGAGAGAGAAATTTTAATGAAGGCAGCTAAGTCACGCTCGCGACAAGAGGACCCCGAGCAGCTGCGGCTCAAACAGAAGGCCAAAGAGATGCAGCAACAAGAACTGGCTCAGATTCGACAGAGAGACGCCAACTTGACGGCGTTGGCGGCCATCGGAcccagaaagaaaagaaaaccaGATTCTCCTTCGCTCGGGATCGACACAGAGGGCTCAGGTTTGTGCGCGAGTGCATCCGGGGGCTTAAATGCAGGAGCGTCGAGGCAGTTCACTCGCCAGCGCATCACGCGTGTAAACCTCAGGGATCTGCTCTTCTGTCTAGAGAATGAGAAAAGCACCAGCCACTCACAACTGCTCTATCGAGCCCTTCTCAAATAGCAGACACACACCAGTCTTTCCCTcatttcactctttttttttttttttacacttattcTCTTTGTCATTCCCATCACCTCTTCCTTTACCGCTCTTTTCTTGTCACAGTCTCACATACAGTGATACTTTTCCTTTCTCAAGCTGACTCGTGCTCTTCTGTTATACTTTTCTAATTGTTTTCTTTTACAACTTTTACTTTTGCCttgtttttttagcttttctgACCCTTTTTGGATTTTACTCTTCAGAAATTGTGTTAAAAGAAAATTGCAATTATATATCATGTTTTTCATAGAAAGTGGCTTTGTAATGTGCAGATTAcctatgtaaaaaacaaacaaaacacaaaaaacaaaaagaattcaCAGTGGAACTACCCATTcattttatatttgtgtttttataaagatgttttaagaaataaaagtGGACAAAGTTTCTATAAAACTTCGCTGGTGTGGCTTCTTTATATAACAAGCTTGCTTTGAGGTGAAATATTTGCTAATGATACAAACAGATGTCTCTCAAGGCATTTTAAATGTTCATTGATGTTCCCTTTCTCACCATagtgctttttttaaattagacATATTTCTAGACTTTGTTTAACGATTTTTGCCTAACCTCGAAGTTTACTACCTTACCTCAAAAAACGCGCTGAGAATCAGTTCAGACGAATGATTTAAAGAACCGTTTCAAAAGAACCGTTTATTGTTGAACTACGTTGCTGTTCTTTTGTTGTCCACTAGATGGCACTGTAGACCTGTGTTCTTTGTGATTGCCTCATGGTTGATTTaggccaggggtcggcaacccaaaatgttgaaagagccatattggaccaaaaaaacaaaaacaaatatgtctggagccgcaaaaaattaaaagccttatataagccttataatgatggcaacacatgctgtatgtatttatattagctatattagcctactataaaaatgacttcgttggctacaaatacatactgagccttcatgattaaatgttcatttccctgcagtgcatcctgtagagaatgacgcgccacgtgactattctgttgtacgatgccgtctcaagtttaacttaat

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-579 Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF4 (TATA-box binding protein associated factor 4).

Ensembl:

ensembl_id ENSDART00000110140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007830 lncRNA downstream 791607 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 791965 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 1796345 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008466 lncRNA downstream 2035077 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00008788 lncRNA upstream 130242 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008789 lncRNA upstream 906224 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008790 lncRNA upstream 906224 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008791 lncRNA upstream 906224 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008792 lncRNA upstream 1102057 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00007829 mRNA downstream 791428 20091255 ~ 20096018 (-) False XLOC_004102
TCONS_00007826 mRNA downstream 815539 20017328 ~ 20071907 (-) False XLOC_004101
TCONS_00007828 mRNA downstream 815539 20069021 ~ 20071907 (-) True XLOC_004101
TCONS_00007827 mRNA downstream 815659 20068245 ~ 20071787 (-) False XLOC_004101
TCONS_00007825 mRNA downstream 815804 19991633 ~ 20071642 (-) False XLOC_004101
TCONS_00007835 mRNA upstream 6648 20994026 ~ 21014572 (-) True XLOC_004106
TCONS_00007836 mRNA upstream 38517 21025895 ~ 21031773 (-) False XLOC_004107
TCONS_00007837 mRNA upstream 39313 21026691 ~ 21030070 (-) True XLOC_004107
TCONS_00007838 mRNA upstream 167300 21154678 ~ 21218172 (-) True XLOC_004109
TCONS_00007839 mRNA upstream 271978 21259356 ~ 21267486 (-) True XLOC_004110
TCONS_00007815 other downstream 1471131 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 1706891 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 2283011 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 2978764 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 4242933 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 592548 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 765097 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 1609736 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 2171811 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 2667972 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_03201861_03220295.mRNA True 3294 mRNA 0.50 15 CI01000058 3200982 ~ 3220724 (+)
bowfin (Amia calva) AMCG00008164 True 3317 mRNA 0.58 16 CM030123.1 44721739 ~ 44740915 (-)