RNA id: TCONS_00007828


Basic Information

Item Value
RNA id TCONS_00007828
length 592
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_004101
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19991633 ~ 20071907 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCTAACTCTAGATGGTGCGCTTGTTCTAATGTTGCCAAGTGGTGCTCACTGTTGAGCTCACTTCCGCACACGTGGTAGTTGGTAGTCATGGTAACGCAAGGCTTTTCTGCTTTCGGAGAGCGTCATCGCAGGAAAATACTAGCGTAAATGGCTTCTTATACAGTCGAAGAGTTTGAGCTCAGCCAGAAACACGAGGATATACTGGGGAAAAGAGCATTACTTCTGCAGCAGATGGAGGCGCACTATGAACAGCAGAGAGCTAAGAGAAAACAGCAGTTTCTGATGTGTCAAGCAGCGAAGCAGAGGAATGCTCAGATTCTTAAGGATttagaaaatgttgaaaaaaatcttcaaacTAGACAGCTCCTTCATCCAAATATTATTAGCCTTGAGACTCGGTATTGGGCCTCAGTTGAAAGGAATCTGCCAGAATGGGAGCAGTATTTGCTTGGGAAAGGACAACCACCTTTAAGCGAAtctgagaaaaagttaaagcaaCAGAGACTGAAAACAGCACAGCAAGATCCTTCACCTGCACAGTGCAGGGGTAAACCACCTCGACCCAAACCTTGATGACATAACTTTTTGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000121722

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008786 lncRNA downstream 977920 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008466 lncRNA downstream 1216652 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00007830 lncRNA upstream 20537 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA upstream 22713 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008787 lncRNA upstream 880149 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00008788 lncRNA upstream 1045713 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008789 lncRNA upstream 1821695 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00007824 mRNA downstream 293839 19729771 ~ 19775182 (-) True XLOC_004100
TCONS_00007823 mRNA downstream 374687 19624490 ~ 19694334 (-) True XLOC_004099
TCONS_00007822 mRNA downstream 418240 19622925 ~ 19650781 (-) False XLOC_004099
TCONS_00007821 mRNA downstream 424732 19622925 ~ 19644289 (-) False XLOC_004099
TCONS_00007820 mRNA downstream 492131 19567738 ~ 19576890 (-) True XLOC_004098
TCONS_00007829 mRNA upstream 19348 20091255 ~ 20096018 (-) False XLOC_004102
TCONS_00007832 mRNA upstream 815539 20887446 ~ 20987378 (-) False XLOC_004103
TCONS_00007833 mRNA upstream 882019 20953926 ~ 20956309 (-) True XLOC_004105
TCONS_00007834 mRNA upstream 906403 20978310 ~ 20988238 (-) True XLOC_004103
TCONS_00007835 mRNA upstream 922119 20994026 ~ 21014572 (-) True XLOC_004106
TCONS_00007815 other downstream 652706 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 888466 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 1464586 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 2160339 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 3424508 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 1508019 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 1680568 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 2525207 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 3087282 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 3583443 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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