RNA id: TCONS_00007823


Basic Information

Item Value
RNA id TCONS_00007823
length 4250
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_004099
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19622925 ~ 19694334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGAATAAAGCCGATTCCATGCTCTGCGCTTGCGACTCTGGCACATCACTCATTTAGCGTTGTTTTGGTCTTGACCTATCCTACTTACAAGCGCGTTTTCCTCAAACAGCAAAATGGAAACAGCTAACCAGATTGTGTCACTCGGGACATTTCAAGTGCTTAAATTACCTTTGGGATTTATTCGTCTTCTGGAATGGCTTTTTGCCATCTTTGCTTTTGCAACATGTGGAGGTTACTCTGGGCAAATGCGGGTTAGTGTGGACTGCATCAACAAGTCTGACAGCAACCTCAGTATTGCCATCAACTTCGCTTACCCATTCAGGTTGAACCAAGTGGAATTTGATGTACCGATGTGTGAGGGAAGGAGACAAGAGCGGCTTTACCTGATTGGAGACTTTTCCTCCTCGGCTGAGTTCTTTGTCACCATTGCTGTGTTTTCCTTTCTGTACTCTCTGCTGGCCACTGTGGTGTATATCTTCTTTCAGAACAAGTACCGCGAAAACAACCGCGGACCTCTCATTGACTTCATAGTGACGGTGGTCTTCTCCTTTATGTGGCTAGTGAGTTCTTCTGCCTGGGCTAAAGGTCTTTCGGATGTGAAGGCGGCCACTGATCCGGATGAGGTGGTTCTGCTCGTGTCTGCTTGTAAAGTTCAGACCAACAAGTGCAGCTCATTGTACGGACCACGATGGTCTGGCCTCAACACATCTGTGGTATTCGGCTATCTGAACTTCGTGCTGTGGGCTGGAAACATCTGGTTTGTGTTTAAAGAGACCGGATGGCACAAGGGAGGCGCAGCAAGATATCCAGCCTCGTCCTTAGAAAAACAAACCACGGCCTTCAACCAGCAGGTCTACAACCAGGGCAGCTTTGATCAATCTGGAGCCACTTTCACTGGAACAGGGGACTTCGCCCAGTCAGAGTACAGTCAGGTGGGCAATTATTCCTCAAGTGGGCCCATTTCCTACACCAACCAGTAACCCCATCAGCCTCATCACTATCCCCAACACAGGGGACCCATTTCTAAGGGCAAATTCGACATTGAGCACAAGAGAAAGTGGAAGAGTTTAGTAAACAGATTTCTGATTCTAGGTAAACCCAGACTTGTTTGTCCAGGCtactaatatgtttttaaaaattaatgacAGGGATCTTTTGATGTATTGTATGTTTTTTGACTTTACCTGTCTGTAAATGTTATggaaaaatcactgtttactctGCAAATCTCATTACATCCATACTTTAGACTCGCTCACATGGGAAATCCATTAATTTAAATGGGTATcttaatgtttgtgttgtgtcaCTATGACCATGTATTTTTTAGAGCCCATTTGTGATCTAAGTATTTCTGCTTCATTTCAAACTTAATCGACTCTTTTGCAAAACCTTATAATATTACATATCATCAAATGCTTCATAGATGCTTTTAAAGGAACATGAATGAATATAACTTCCTTCATATTTGACATAGGGTGGCCATAACTGATATGAACTTTGCTGAAATGATTTATCCATCGATTAACAACACCATGCATCGATATGGGAGAAAGCAAggcaatttattaaaattttatcaaAAGGTCACTAAgacttttttgggggggggataACATTCACAGTTGAATAGTCCACAATAAGAGCAGAAACATTAAAGAGTTTGCAtcaaaattaaaatcaattattatTCCTTGCAAAATTACAAAACCTTAAgacttttgttcatcttcagaatagAAAGGCTTTGGTCTCTCCGTTAATATGCCTCAAAAAGTCTAAAAATAAATCTAGATGAACCAAGCAAtcaaaaacttatttaaaaaatataaaaggaCTCATTTATATGACTGCATTTAcaactaaatagatttttttattcattttacaaaCCAATccaaaaaaactacttttaaaacatttgaaaaaagatTTCAAAATCTTTCAAAATGATTTGTTATTGTCTTCAAGTGAACACTTTTCAAAAACACAAAGGAAAAACGTTATAGTTTTTAGTACGTCTCTGTCATGTAAACTCATCTCATGGGTTTGATATGACATGAGGTTTATTAACGATAACAAAATGTTCTGGGCTGAACTAACTCTTTCAGGAAGTATATGGGATATGTTATGATATCATGTTGACTTTTAAGTGTACTTGTCTTAATGGTGATCACCTACATGCTAAAAAGTGCTAGGTTGAATTATACCAAATTTGTGGAAAACATGTGACTCTGGATGTTTTGCATGGGTAAATATGTGGGAATAACCCAAATACACTGGATGAGTGAAAAACGTTgctttttatgccaaaaatcattagaatattaagtaaagatcatgcttAATGAAGGCattctgtaaatatttcaaaactcGATTAGTGACATGCATTGTTTAAGCAGTTAATTTAGACATGTTTAAAGGAAATTtcttcaatatttagattttttgtttactaTCATATTCCAGATTTTCATATAATTGTATCTCGGAACAAATCAAATTTGAACAAAACTTTACAAAGAATAATGTAGTTTCAGGTGATGTATGAAAAAATGACACATATgactagttttgtggtccagggtcacatatggaCAACAAAACATGGGTTAAATGGGACCACAAAATATGGgttaaatatttaagttaaaaatgttatctatattttataattaatctaTGTTTATCCAGATTTGAGGTACAAAAAAATTAACCCAGCactttttttatagtgtagagAAGGTGATGCAGGTATTTGTAATTTACACTATTTGACAGACTTTTAAGTTTTCATTTGTCAGTATAGATGTTAGATTACTGTTAATCTGCATATTTTTGGATTTCTTCTCCACCTGAATAATGTCATGCCAGTGGTTGTTGGTTTGGTGTTTGCACTTTTGTGTTTCTGCATTTATATGGCTCTTAAATGTTTGCACTGTATTGATGAGCTGCATGAAGTTGTGCCATATTATTAACCCAGTTTGAGTTTGTACATAAATTTTCTCCTCACTATATCAGGGTcatatgcaacccaggctcattctgaaaacacaccactatatacatttctggagaaagccagatacgtcccaggaggtatgttttttttttcagtttttgttttcacaaattcaccagaggctgctgtgtactctttttcagatctcaaatttctcttgcgagtgccattcacacctgctgttctcacgtaaatccactagaggccgctgtcgactgactgaatgaatgaccgatagactgacccacccacctctCTCCCTAAACCTTCCCTAAACttagggcttaatttgtgccaaaACAAGCACCTCTGAAATCCGATCCGGCCCCTTATTTTACTAAtccccctccacacacacacccctGCTCTTAACTTTCTTCCGCAACtctccaaccctcttcactttcgtccgcatTCTTCAGCAATTTGCCATCCCCCTACCCATCCCCCCGGCCTCTTCACTTTCGTTCTCGACTCCTAAACCCCTGCCTAAAGCCAACCAAGCATCAATTGTCCTtgtcacccacttccctaaacccaaaaaacagttttaaaaaaacattcagaaaaagaaaagccctcgcctgatttttaccacgttttcagatttttccacattctcacattcgctttttggaaccgttcttcaccagattcgatTCCCATCATTACAGTCAACTcctttctgcgtctcaagtctgccgatgtacatggcaagctactggacaaactggtaacagccgaaaagccatccatatggaggctagcagtcagctggtaatcgTGAAAAAAGGAACAGTGTCGTACCGCACCATATGGTTCATTTTACTGCCGAAATGCAGCCAGAAGTACTTCTGGCTAcctaattcgcaatctccagaaatgcatgtaggggtacatttttagaatgagtctatgttggtCATATTGTCTATTCTGTGACCTTTATTATGATCACAAAGTGATTGAAATACAATCAACGCATCATTTCTTTGCTTGTGTTCGCTTGCTCCTCGTCTGATCCTTTATAAACGCATGAGGCTTTATTAACTACAAAGACtataaaatgagacaaaaaactGGTAATGTTCTTGTTCTGATTGCTGTTGCATTTCAATGTGAACGGGTTTCTGTCTTGATATGTTAAGTGTATGCATTTTTGATCAGTGGGTGTGAATGCTTTGATGCATTTTGTGTAAAGCCAATAAAGATATTGTACATTCC

Function

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-625 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

Ensembl:

ensembl_id ENSDART00000054735

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008786 lncRNA downstream 533389 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008466 lncRNA downstream 772121 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00007830 lncRNA upstream 398110 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA upstream 400286 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008787 lncRNA upstream 1257722 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00008788 lncRNA upstream 1423286 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008789 lncRNA upstream 2199268 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00007818 mRNA downstream 25681 19511642 ~ 19598809 (-) False XLOC_004098
TCONS_00007819 mRNA downstream 38631 19514881 ~ 19585859 (-) False XLOC_004098
TCONS_00007820 mRNA downstream 47600 19567738 ~ 19576890 (-) True XLOC_004098
TCONS_00007816 mRNA downstream 123050 19490335 ~ 19501440 (-) False XLOC_004097
TCONS_00007817 mRNA downstream 123051 19494939 ~ 19501439 (-) True XLOC_004097
TCONS_00007824 mRNA upstream 35437 19729771 ~ 19775182 (-) True XLOC_004100
TCONS_00007825 mRNA upstream 297299 19991633 ~ 20071642 (-) False XLOC_004101
TCONS_00007826 mRNA upstream 322994 20017328 ~ 20071907 (-) False XLOC_004101
TCONS_00007827 mRNA upstream 373911 20068245 ~ 20071787 (-) False XLOC_004101
TCONS_00007828 mRNA upstream 374687 20069021 ~ 20071907 (-) True XLOC_004101
TCONS_00007815 other downstream 208175 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 443935 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 1020055 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 1715808 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 2979977 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 1885592 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 2058141 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 2902780 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 3464855 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 3961016 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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