XLOC_004103 (taf4a)


Basic Information

Item Value
gene id XLOC_004103
gene name taf4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20887446 ~ 20988238 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007832
ATGGTAACTACTTTGATCGGGACGTCCACAGTGCAAACTTTGAACGGAGGCAATGCAATGGATCCGCACACTGAAAGCGGCACTCCAGTGTCCAGTggtccatcatcatcatcgtcagaCGACGCTTCAACTTCTGTCCCGGTTGTTAATAACGGGCCCGGGGTGGCGAAAGGACTCGGAAACGTCACGGTCGCCCCAAGCCCAAACACAGTGATACAGTCTTCTTTCGGGACTCCTCCAGCCGCAGCATCCAGTGCAGGACCCTTAGTGACAGTTGTCAGGCCATCTATGCAAACTGCTGGAGCAGGTTTAACTATTAACGGAAGTAATAATAATACCACCATTTCTGTAGCCAATGTAGCGACCCCGGGAATaactactacttcaactactactactagttCTACTACTACAACGACCCCTCTTTTGTTGAACCAGACTTCTGCACCTGTCACCGCGAGCAAGTCCGAGTCTCCTAAAACTATCATCCAGCCCGCAGGCAGCATGACTGTCGGCCCTGCAGTGGCCAAGGGGGCTGTTTTGCAGGGGGTTGCGAGAACCGCAGCTCCGGCAACTGTTGCAGCAGCATCAGCATCATCTAGCCCGACCATCAGGGCCAGCGCGCCACAGGTGTTAGCGCCCCGACTCCCTCAGAGCAGCCCGGGCCAGAACATCCAGAATATCCAGCTACCTCCAGGTATGGTGTTGGTGCGCAGTGACAGTGGTCAGCTGCTGATGATTCCACAGCAGATGTTGGCACAATTGCAGGCCCAGACTCAGTCCGCCCGCCCTGCTGCCCCCGCCAGCACCACCCCTGCGCAGATCACTCCTGCTCAGGCACCTGGAACTCCTCTTATGGCCCGACAGGTGACCCCTACCACCATAATAAAGCAGGGCTCTCATACAGCCAGCAGCACAGCCACTACCACACTCCAGAGACCACCTGTACAGCAGGCCTCCTCTGTGGGTCCAGTGCTGTCAGTGCAGGCAGGAGCCGCCCAGAGGACTGTGACTGCTGCCACAGGGACCACCGTCTCCTCAGCAACGGAGACAATGGAGAATGTAAAGAAATGTAGGAACTTCTTGTCTACGCTGATAAAGCTAGCCACTAGCGGTAAGCAGTCGTCAGAGACTGTCGCCAACGTTAAAGAGCTGGTCAAGAACCTGCTGgAAGGGAAGATTGAAGCAGAGGAGTTCACCAGCAGGCTCTACAAAGAGCTCAACTCCTCTCCTCAGCCTTATCTAGTGCCTTTCCTTAAGAGGAGTCTTCCAGCTCTGCGACAGCTCACTCCAGACTCTACGGCCTTCATCCAGCAGAGCCAGGCCCTCCACTCACCCACTGTGGTGTTGACCAGTCCCAACACTGCTGGAGGCACCACCGCAGCCCCTCGTACACTCACCCAGCCAGCCCTCAGCAACTCCAGTCAGACTGCCTCTCTGGTGTTGCAGTCTCCGCAACAGGGGGCAATAGTGAAGCCCCCTCAGGTCACCCTAACCACCACCCCGATGGTCACGCTCAGGGGTCAACCTCACAGCCACATAGTAGTGGGTCAGCCTCAGTTACAGCTCAAACAGATCCAGACAGTGCCACTGAAGCAGGGTGTGATGGCCAGCACTAAACTGGTTCATAGCTCTGTCAATTTAGTGGCTGCTCAAAAGAATAAACCCAAGGATGGAGCTGGAGGAACTTTcagGGATGATGACGACATAAATGACGTGGCCTCAATGGCGGGCGTTAATCTTTCTGAGGAGAGCGCTCGAATCCTGGCCACAAACTCAGAGCTGGTCGGTGCAGTTACGCGGTCCTGCAAGGACGAAGCTTTCCTCTCTGCCAGTATGCTACAGCACAAGATACTAGAGATAGGCCAAAGGTTTGGAGTGACAGATCTGGGTCCCGAAGTGGTGAACATCGTCTCTCACGCCACTCAACAAAGACTGCAAAACCTACTAGAGAAAGTTTCATTGATCGCCCAGCAAAAAAACATGACTTACAAGGAGGATAGTCGGTACGAGCAGGTGGAGGATGTTCGCGCTCAGCTCAAGTTCTTTGAGCAACTCGACCAGTTGGAGAAACAAAAGAAAGAGGAACAGGAGAGAGAAATTTTAATGAAGGCAGCTAAGTCACGCTCGCGACAAGAGGACCCCGAGCAGCTGCGGCTCAAACAGAAGGCCAAAGAGATGCAGCAACAAGAACTGGCTCAGATTCGACAGAGAGACGCCAACTTGACGGCGTTGGCGGCCATCGGAcccagaaagaaaagaaaaccaGATTCTCCTTCGCTCGGGATCGACACAGAGGGCTCAGGTTTGTGCGCGAGTGCATCCGGGGGCTTAAATGCAGGAGCGTCGAGGCAGTTCACTCGCCAGCGCATCACGCGTGTAAACCTCAGGGATCTGCTCTTCTGTCTAGAGAATGAGAAAAGCACCAGCCACTCACAACTGCTCTATCGAGCCCTTCTCAAATAGCAGACACACACCAGTCTTTCCCTcatttcactctttttttttttttttacacttattcTCTTTGTCATTCCCATCACCTCTTCCTTTACCGCTCTTTTCTTGTCACAGTCTCACATACAGTGATACTTTTCCTTTCTCAAGCTGACTCGTGCTCTTCTGTTATACTTTTCTAATTGTTTTCTTTTACAACTTTTACTTTTGCCttgtttttttagcttttctgACCCTTTTTGGATTTTACTCTTCAGAAATTGTGTTAAAAGAAAATTGCAATTATATATCATGTTTTTCATAGAAAGTGGCTTTGTAATGTGCAGATTAcctatgtaaaaaacaaacaaaacacaaaaaacaaaaagaattcaCAGTGGAACTACCCATTcattttatatttgtgtttttataaagatgttttaagaaataaaagtGGACAAAGTTTCTATAAAACTTCGCTGGTGTGGCTTCTTTATATAACAAGCTTGCTTTGAGGTGAAATATTTGCTAATGATACAAACAGATGTCTCTCAAGGCATTTTAAATGTTCATTGATGTTCCCTTTCTCACCATagtgctttttttaaattagacATATTTCTAGACTTTGTTTAACGATTTTTGCCTAACCTCGAAGTTTACTACCTTACCTCAAAAAACGCGCTGAGAATCAGTTCAGACGAATGATTTAAAGAACCGTTTCAAAAGAACCGTTTATTGTTGAACTACGTTGCTGTTCTTTTGTTGTCCACTAGATGGCACTGTAGACCTGTGTTCTTTGTGATTGCCTCATGGTTGATTTaggccaggggtcggcaacccaaaatgttgaaagagccatattggaccaaaaaaacaaaaacaaatatgtctggagccgcaaaaaattaaaagccttatataagccttataatgatggcaacacatgctgtatgtatttatattagctatattagcctactataaaaatgacttcgttggctacaaatacatactgagccttcatgattaaatgttcatttccctgcagtgcatcctgtagagaatgacgcgccacgtgactattctgttgtacgatgccgtctcaagtttaacttaat
>TCONS_00007834
GCGCCTTTTCACGCTTTCAACACAGACGCTTCAAAACACGGGGCCATCTTGGGGGAAGACAGCCCGCTGTGAAGTTCACACAACAGCCTCTACATGCTTTATAACCCGCACATAACAGCTATAAGTGCCTCTAGACACAACCGAGAGCAGCGCCCGTATAATTCAACGGTTGTTTTTCAACTTCACAAGGCCCTTTTCTCGATGACAGACCGACTCTGACCGCGCTCCGCCAGAATCAACTGACGTTTCTCATGTCCCGCCTCCACGCACGGAGACCACCAATGGCGGCTCCACAAAACTTCAGCGTAATGACGTTTCCGCTTTTGCGCGCATGCGCAATGTCATTTTATCCAAAGCTCCTCACTGTTCACATCGAAGATGGCGGCAGGCTTTGACCTGCTATATAAGGATTTCTGTATTAAAAGAGTGGGAAAGAAACTTTTTACCGACACTTCAGGTTGTATTAGATTAGACGTTTCCACATCTTGCCATAATAAGTTTGAGGTAAGCGCCCAGGCAGCCGGAAAATCACCCCGCTGACTCCGGGAAAAGAGGCAATTCAACTAGCTAATGTTGACATTTTGCGAGCTCTTGTACATATGAACATAATGAAAGCAGTCGCTCTTCAAGTGTGTTAGATGATTATTTCTCCCAAGAGCATTGTTACTAATGGACTTGAGGTGACACGGGCGCTTGTCAAATCCTTATTGACATTGTGACACGAGACTCCCATTCACTCACGCTTGTTTCCTTCGAAAAGCAACTGGAGGGAAAAGCCGATGAAAACCCAAACTTCCTGAACTGATGTGCCAGAGGCACAGATGGAAGACAGCTAAGGCGATCCGGTCTTTCTTAATGCTATGGTAACTACTTTGATCGGGACGTCCACAGTGCAAACTTTGAACGGAGGCAATGCAATGGATCCGCACACTGAAAGCGGCACTCCAGTGTCCAGTggtccatcatcatcatcgtcagaCGACGCTTCAACTTCTGTCCCGGTTGTTAATAACGGGCCCGGGGTGGCGAAAGGACTCGGAAACGTCACGGTCGCCCCAAGCCCAAACACAGTGATACAGTCTTCTTTCGGGACTCCTCCAGCCGCAGCATCCAGTGCAGGACCCTTAGTGACAGTTGTCAGGCCATCTATGCAAACTGCTGGAGCAGGTTTAACTATTAACGGAAGTAATAATAATACCACCATTTCTGTAGCCAATGTAGCGACCCCGGGAATaactactacttcaactactactactagttCTACTACTACAACGACCCCTCTTTTGTTGAACCAGACTTCTGCACCTGTCACCGCGAGCAAGTCCGAGTCTCCTAAAACTATCATCCAGCCCGCAGGCAGCATGACTGTCGGCCCTGCAGTGGCCAAGGGGGCTGTTTTGCAGGGGGTTGCGAGAACCGCAGCTCCGGCAACTGTTGCAGCAGCATCAGCATCATCTAGCCCGACCATCAGGGCCAGCGCGCCACAGGTGTTAGCGCCCCGACTCCCTCAGAGCAGCCCGGGCCAGAACATCCAGAATATCCAGCTACCTCCAGGTATGGTGTTGGTGCGCAGTGACAGTGGTCAGCTGCTGATGATTCCACAGCAGATGTTGGCACAATTGCAGGCCCAGACTCAGTCCGCCCGCCCTGCTGCCCCCGCCAGCACCACCCCTGCGCAGATCACTCCTGCTCAGGCACCTGGAACTCCTCTTATGGCCCGACAGGTGACCCCTACCACCATAATAAAGCAGGGCTCTCATACAGCCAGCAGCACAGCCACTACCACACTCCAGAGACCACCTGTACAGG

Function

symbol description
taf4a Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF4 (TATA-box binding protein associated factor 4).

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-579 Predicted to enable DNA binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF4 (TATA-box binding protein associated factor 4).

Ensembl:

ensembl_id ENSDARG00000068192

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007832 False 3560 mRNA 0.48 15 20887446 20987378
TCONS_00007834 True 1812 mRNA 0.52 3 20978310 20988238

Neighbor

gene id symbol gene type direction distance location
XLOC_004102 ogfrl2 coding downstream 791428 20091255 ~ 20096018 (-)
XLOC_004101 C11H3orf14 coding downstream 815539 19991633 ~ 20071907 (-)
XLOC_004100 namptb coding downstream 1112264 19729771 ~ 19775182 (-)
XLOC_004099 SYNPR coding downstream 1193112 19622925 ~ 19694334 (-)
XLOC_004098 atxn7 coding downstream 1288637 19511642 ~ 19598809 (-)
XLOC_004106 slc6a14 coding upstream 5788 20994026 ~ 21014572 (-)
XLOC_004107 fmoda coding upstream 37657 21025895 ~ 21031773 (-)
XLOC_004108 NA coding upstream 129382 21117620 ~ 21119973 (-)
XLOC_004109 mapkapk2a coding upstream 166440 21154678 ~ 21218172 (-)
XLOC_004110 dyrk3 coding upstream 271118 21259356 ~ 21267486 (-)
XLOC_004063 CR854846.1 misc downstream 4759768 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 8195755 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 8265679 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 8296150 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 8374184 12512966 ~ 12513262 (-)
XLOC_004096 BX511159.1 non-coding downstream 1471131 19416178 ~ 19416315 (-)
XLOC_004095 CT737428.1 non-coding downstream 1706891 19180452 ~ 19180555 (-)
XLOC_004093 NA non-coding downstream 1796345 19088414 ~ 19091101 (-)
XLOC_004092 NA non-coding downstream 2035077 18849926 ~ 18852369 (-)
XLOC_004082 LO018315.7 non-coding downstream 2738958 18144285 ~ 18148488 (-)
XLOC_004115 CT573222.1 non-coding upstream 764237 21752475 ~ 21752589 (-)
XLOC_004116 NA non-coding upstream 905364 21893602 ~ 21906060 (-)
XLOC_004117 NA non-coding upstream 1101197 22089435 ~ 22094397 (-)
XLOC_004123 CR555297.1 non-coding upstream 2170951 23159189 ~ 23159307 (-)

Expression


Co-expression Network