RNA id: TCONS_00007840


Basic Information

Item Value
RNA id TCONS_00007840
length 5977
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_004111
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 21278687 ~ 21363834 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAGTGCTCGTTGTGAGGGGCAGGCTCGCGCACGTCCGCTCGCCTAGTGACATTTAAAGCGCGCGTCTGCTTCACTGTGCGTCACACGCTCGCCACTGGCGCTTCAAAATAGTTTGCATTTAGCACACATTCAACTATATCCAAAAGACATGGCGTCCGTCACTTTAGGACAGCATCTCGCTCAACACCTACGCGACCCGGATCAGCAACTCCTTCACAAACTCAAGTCGGGTGACAGAAAGAAATTCGCGCGTAAATGGTCGCTGGAGAAAATAAAGCGAAGCAGAGCGAGTGATGTGGACAGCGCGAGAGCCGCAGTCTCAGCATCGCTCATGTTATTCAATCACGAGCCTTCTTCAGCATCTCACAACCGAGACTGTAGCTCAGGCTGGCCACGTAGTGGCATGGACGGATCGCCCGCAGACATGGACAGAGAAAACGCCAACAATAATAACGGAATATTCCGCAGGCACAGCGCCGGGAGCCGGAGGAGCTCGGGGAAGAGTCACGCGTCTTCATCACCGCAAGAAGTTCACAATACCTCGCCGCGATGTAACTTCATCTGCCCGCCGCCAGACGAGCTGGAGGGACTGCAGATCGACAAACTGACGCGAGGGAAGTCAGGAGTGGTAAAGATGCGAAATGAGCCTCTCAGGAGGGAGGCATGGTCCATCTTCAACCAGAGAGACCCGAGGGTGAAGGCTGAGAAGGGAGAGGGCCACAGCTTCACCTCCACACCGCTGAGTCAGGACTGGTGCGACGCCTGCAGCCGCCAGATCAGCAGCGCTGCGCTCAAATGCCAGAACTGCAGCTACACATGTCATCTGGAGTGTCAGGGACTCGTTCAGCTGGACTGCAACCAACTAGAGAGGCGGACAGAGGATGTGTCTGACCCTAATCTACAGCGCCCCTGTGCCAGAGACCCTCAGGAGACCAATGTCAcaaaagaggaagaggaagacAAGCCTATATCTCTCACAGAAGAAGAGATTAAAGCAAAAATAGACGACTACAACTCCAAAGTGACGGAGAATGGGATGAAATTAAGCCCAGACGGCACATACACTGGTTTCATCAAGGTTCATTTGAAGTTGCGCAGGCCCGTGACTGTACTTTCTGTGGACGGGAAGTTACCAGGTCCGTGTTCCTCATCTGATGGTTCGGATAACCGCACGTCCTTCTACCTGCCCTCCGATGCCGTCAAACAGCTCCACATCAGCAGCACCACCACGGTCAGAGAGGTCATTCAGGGCCTGCTGAAGAAGTTCATGGTACAGGACAATCCACGCAAGTTTGCCCTCTGTCGCCTGACCCGCCGGGACAGCCAAGATCTTTTCCAGAAGTTGCCCTTATCAGACTGCCCGCTCTACTTGAGACTGTTAGCCGGTCCAGATCTAGACAATCTGAGTTTTGTACTCAAGGAAAACGAGACTGGAGAGGTGGAGTGGCACGCGTTCTCAGTACCGGAGCTGCAGAACTTCCTGATCATCCTGGAGAAGGAGGAGAAGGAACGCATGCGGCAGGTGGAGCAGCGCTACTCCACTTACAGAGAGAAACTCCTACAGGCTCTGGGTGAGGTGGAGAGCAAACCAGGCTAATGGAGGACAACCAAACTGAGCCAACAGACGCCCAGCAGACCAACTCACAACACCTCCACTCAGGACTTATTCCAGCACGACTCAGTGACCTTTAACCCTCAAAGACAGGGGAAGCGATGGAGACGTGAACAAGACTAAGAAGAGGAGGTTGGAGCTAAAGAAGAATTCCTTCTCTCCTGGAAAACATGGCACACTGTTGAAAGCCCAGACGTTTGTTTCTGGTAGTCAAGCTTTTTGATATTCCATTGGGTTTCTTTAGTTGTTTTTACATTCAATTCCGTccatttgtgttttctttttattatatgcTGCTGCTATTGCTGCTACTGCAAGTGTTACTTAAAGCATGACTTTCCCTAGGGTCTCTCAGCTTGTGTCTATACTGCATGTCCTCTATCAGGGAATATCTGAATGAAAGAGCGCTgggaaaataaaaaacagcacTTCCGATCCAGAAAGGAAGTGGACAGACTTACTGTATAGAAAATATGACGCCTGTGAGATATCGGAGGACAAATAACCTTATCCAAATATCAAATTACAAACTTTATAACTGATTATTAGAACATGCTACTCTACAAACAAAAAGGATTATTCTATTTGTACTGGAGGTTGTCTTAATATAGCTATAAATGTACTGTATTGCTGACAATGTTTCACCAGACTGTTCAATATTTCACCCCACAATCTCCATTCAAAGGATCAAAACAGTTTCTATCATTCTATTCTGGCCTTTATTTGGCCAGATTTTACACATAAACTTAGAAATGTACGATATAACTCGCAGCCTTTCTGATATAATCCTTTTTTTATAAGATATCATTTTCTCCACCTTTTTCcatcagaattatgaataaattCATGAAGATTCTGATTTAATTTCTTATCATTTTGAGTTTATATATTGACAATTTTTGTTGAAAGTTTATAGGCTTTATATCTCTAGTTTAACTCAAAATTGTGAGATATGAGCTCAAAATGATCTGAGATTCACTCAGAATTACTTGATGTTAACATAAAATTGTGAAAAACAACCCAGAATTTTAACTTTTCTCACAATTCAGTTTAAATCATCAAAATGGTGGAAATCTCAAAAAAGAAGGCCCAACATCTGTTTACCATATCTACACAGCAAACAAttctgtgtttaatagacatctaaatgtagacagcttcgCTACAACAAGaataaacttgggctgtcagtaaaaatcgaTATAGATATTATAGACATATagataatagacatctaagaataacccaaaactagactagttgtcAAATAAACTAACTTTATAAGTGTATTGATTCATTTAtgtctatttgatgacttgtctagttttggcctattcttagacgtcttaTATATATTAACAGACAGCCCAaacttagccttgttttagctaagatgactatgtttagacatctattagacatcttttaaaatgaaaaagtgcTTGCTGGATATAAAGAGCTATTTTAAAATGCCTAAAGCCTTCATGGACACAgctactctttaaaaaaaaaaaaaagccccatCTCACATTCAGGTGTCCCATGAAAACTTGTGTAAACCCTCGGCATTGAGCGATCAGCTCAGTCTCTCAGGCGGATCTCTGCTTTTTGAGGATTGTGGTTGTGTTTATCCGGTGAGCTTTTCTCAGTCGCTTCAGCTTTTATCATGTAATACACAAGGTCATGTCTGATTAGGATGAGCTCAGCTGAAACAAACCTTGAGGATTTCAGTCTGTGTTACACCAAAGGAAAACAGAAAGTTCTCTATATTGTGATTATAACTTAAAGCTTTTACAAGGCAGTGCAGACATTATCATACAGAAGCTTGTCTTTTtacaaagtaaaaaacaaaaaattgtgaATTTGTAAATTGTTAACTTCTCAGAATTGCAGAATTGACCCGTATCCATCGAAGCGTTATTGTGCAGCTGAAAATGCCAGAGCTCTTCTAACAACGCTTTGTTTATTTTGGAGGGTTGTTTTCTGAcacaaagtaaaaagtaaaaaaaaaaaaaaaaaaaggtgaatctgtaaatagtttctatctGAACTTCTCAGATGGTGaacttcattccgctgtggcgacctctgattaataaagggactaagccgaaaagaaaataaatgaataaatgaacttctCAGAATTGCAGATTTTTATGAGCTACAATGACACGTATCCCTTAAAGAGTTATTGTGCAGCTGAAAATGCCAGAGCTCTTCCAAAAACGCTCAGCTGTAAGAGCTATTTCAACTCTGAGCATTTCACAAATGCGGCTTTTCCATTGACAACAACTGAAAAGTTACGCTCAACTTGGAAAAAACAGCTTTGGTGGACTGAGCGCCCCACTGAAAAAAAAGTCTGCAAATTGTTGTAAACAGTTTTTATGTgttcaaattaaacaaaaaattaaatttagtaatgttctacttaatttatttgtttcaatCCAgctcaaataaatagtttacacttttcttttcttttttttctgtgtaactGCTTGTTTCCGCTTTGGGGGAATCAAAAGTAAAATTGTAATTTCAACTTTTTAATCACACTATTGTCTGAATTTCTAGCACTTTCTTGCAATTGTAAACTGCAGAATGCAAATTTGCATCTTACAGTACAAGATTTCAGGACAACTTGTGATTCAAACTCAATTTCCTcacaattgtgagatataaactcaAAACTTCAGGGTATAAACTCAgtgagatataaactcagaacTGCAAAATCTAAACTcaaaattgcaaataaaaaactCAGACTTGTGAAATGTGCCTAGAATTCTGACATTTTGGAATTGTGAGGGAAAAGTTGCAATTACCtttatttatattaacatatAACTTGTGGTGGAAATGGGCTTTCATATCTCCATGCCAATATAGACTGGGGATTTGCACACCAACACAGGCCACTGAGtggtccattttttttttcatatccaTAATATGCATTCAAAGGGATTTTTGTATGTGCATTCTTCTGTTTAGCTCTGAGGTGCATGTGAACTGAATGTGTCTGTGACACAGAGGAAATTCAATTACATACGAAGATCATTAATAAGCACTGAAGTGTTGTTCCACAGTAATCTGGAATAACTGTGAACATTCAGCTTGATGTTTTAGGCACTGATAAATCATTTCTCATCTCTCTTTCAAACACATTTAAGGCAAGACACTACAGGTGAACCCTGTTATTGTTGTTGATGATGTTTTTTTAGGTTATTTGGCCTTTCATAGAGTATTTTATTATGAGTAATGtacagaaaacacacaaaatacacctttgtgtttttttttcgcaCTTTATCAATTCTGTTtgtagatttaaaaaatatatatattgcagctAAAGGTTTCTCCAAATTAGTCTTTTATGAATCTCCATTTCAGCAGCACTTACACCAAAATTTAGAAATTCAAAcagttttattgatatttttgagGGTTTTTACAGTGGGATTTGTTCATGCTAATTGTGTCTGTTCAAATAAAAACTGTTATTCTGCAAATAAAGATTTCTTTTGTCTCTTCACAGTATTTCATGAATTACAGAGTGATAAAAGGtgatgagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataataatttaatgaaataatgtctcgtttgtatatttaaacataaatCCTCTTGTTCAAAATTATGTAATACAAAAAAAGTAGACTATTCTTAAAGTAATCAATCCGTTaccttttttgtttgtctttattgtcctgcagtgtcttgccttaagtCCCGATCCATAAAACAATTTCACAGAATTTCAATAAAACAGCAAGCAGTTTCTGGAACATGTATGTTTGTAGATATGGCACTTTAGAGTCCTGAATCTCCATATGGATCAGTCTGCCTGTTTAGCTCTCAAACGGGCAGACATTCACTCTTCAGCGAGCGGCAGGGGCCTCGTATGTTCTATTCCTGCTGCCAGTGCCTTTAGTCTCCGTGTAGCTTCTTTTGACTGtgtactgtacatatatatgctCTATATGTCTGGCCCTATAAACACACACGTTCAGAGGCAGTAGCCTGGTGCTTTCAATGTCAGAGCCATTGAGTCTGTGTGGGACTTTTTTGGGACTAGtgtttaaaatgaagtgtgtgtgtgcgcgcgtttgtttaatttatttttttttggttcaatTTAAAGTGTGAAAACTTGAATATGTGGACAAATCAGTACTATCAggcaatcttttttttcagagtatcaaatgtttaaaatgtctaTAAAGCTGTAAATATGAAGAATGAAATAAAGGGTTATCCTttcgtgatgatga

Function

GO: NA

KEGG:

id description
ko04014 Ras signaling pathway
ko04015 Rap1 signaling pathway
ko04218 Cellular senescence
ko04670 Leukocyte transendothelial migration
ko05200 Pathways in cancer
ko05223 Non-small cell lung cancer

Ensembl:

ensembl_id ENSDART00000080051

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008788 lncRNA downstream 158714 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008787 lncRNA downstream 325438 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00007830 lncRNA downstream 1182848 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA downstream 1183206 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008786 lncRNA downstream 2187586 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00008789 lncRNA upstream 529768 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008790 lncRNA upstream 529768 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008791 lncRNA upstream 529768 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008792 lncRNA upstream 725601 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008467 lncRNA upstream 1541365 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00007839 mRNA downstream 11201 21259356 ~ 21267486 (-) True XLOC_004110
TCONS_00007838 mRNA downstream 60515 21154678 ~ 21218172 (-) True XLOC_004109
TCONS_00007836 mRNA downstream 246914 21025895 ~ 21031773 (-) False XLOC_004107
TCONS_00007837 mRNA downstream 248617 21026691 ~ 21030070 (-) True XLOC_004107
TCONS_00007835 mRNA downstream 264115 20994026 ~ 21014572 (-) True XLOC_004106
TCONS_00007845 mRNA upstream 717 21364551 ~ 21404358 (-) False XLOC_004112
TCONS_00007846 mRNA upstream 2764 21366598 ~ 21404044 (-) True XLOC_004112
TCONS_00007847 mRNA upstream 41863 21405697 ~ 21528056 (-) False XLOC_004113
TCONS_00007848 mRNA upstream 41863 21405697 ~ 21586157 (-) False XLOC_004113
TCONS_00007849 mRNA upstream 42852 21406686 ~ 21585176 (-) False XLOC_004113
TCONS_00007815 other downstream 1862372 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 2098132 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 2674252 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 3370005 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 4634174 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007850 other upstream 216092 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 388641 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 1233280 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 1795355 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 2291516 23655350 ~ 23655478 (-) True XLOC_004130

Expression Profile

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