RNA id: TCONS_00008465


Basic Information

Item Value
RNA id TCONS_00008465
length 1075
lncRNA type inter_gene
GC content 0.35
exon number 5
gene id XLOC_004092
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18849926 ~ 18852369 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttaagttaataatGACTACtactaatatatgtgtgtgtattatttgaCAAAATGGACTTGAGTagacacattaaaataaacattcttatAAACAGacttttttctttaacaaaataaattatttgtttgtgGAATACGTATGTTTTGATGAATCTGTGCTTTACAGATTCACACAGTCTTTCACACTTAAAAAAGACGCTCGTTTTCGCCACCTACTGGCGTTACAGTGTAGTTTACATTATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATTGCTGCGGCCGGACAGCAAACTACTCTTTGGCAGGTACATTAAGAAAATGGGCAAAAGATGAGTCCTAACATTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTGAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTTGCCTATGAGGATGAAAGTTCACCAGCTACAGTTCTAGACATTAAAGAGAACAAAGAAACTGTCAGGAGGAGGATATTCAGAAGAGGGGAATTTACAGACGTAGTAGAGAAGAAGTTTCCAAACGTACCAATAAAATTTATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaaaatggaGTAAAAGCAGCCTGTTCATTGGATTCTggtctactttttatttttattttttttaacaattttaataaataatttgtgaaaATACATTGATTCATTGTGAAATTTCTCTAACTTCAAATCTATCCTGCACAATAATCCTGCAGGAACTGTATATTTTAATAGACCTGTAGGATTGTAATTCCTGCAGGAACAATCCCTGCATAAATTTCCTTCATAAATTTCTGTCTTAAAATTTCCTTCACAAAATTCCTGCAGGTATTCCTACAggaaaatgagctgaaaatcCTGTAGGATACCTGTATGAAATTCCTGCAGGATTCCTGTAGGCTATTTTTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0021546 rhombomere development biological_process
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0055016 hypochord development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0097150 neuronal stem cell population maintenance biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0098727 maintenance of cell number biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008464 lncRNA downstream 293912 18551830 ~ 18556014 (-) True XLOC_004088
TCONS_00008463 lncRNA downstream 300042 18547015 ~ 18549884 (-) False XLOC_004088
TCONS_00007789 lncRNA downstream 701438 18146659 ~ 18148488 (-) True XLOC_004082
TCONS_00007788 lncRNA downstream 702971 18144285 ~ 18146955 (-) False XLOC_004082
TCONS_00007784 lncRNA downstream 847647 17998053 ~ 18002279 (-) False XLOC_004081
TCONS_00008786 lncRNA upstream 236045 19088414 ~ 19091101 (-) True XLOC_004093
TCONS_00007830 lncRNA upstream 1240075 20092444 ~ 20095839 (-) False XLOC_004102
TCONS_00007831 lncRNA upstream 1242251 20094620 ~ 20095481 (-) True XLOC_004102
TCONS_00008787 lncRNA upstream 2099687 20952056 ~ 20953249 (-) True XLOC_004104
TCONS_00008788 lncRNA upstream 2265251 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00007812 mRNA downstream 30748 18802302 ~ 18819178 (-) True XLOC_004091
TCONS_00007811 mRNA downstream 31213 18799186 ~ 18818713 (-) False XLOC_004091
TCONS_00007810 mRNA downstream 31286 18799186 ~ 18818640 (-) False XLOC_004091
TCONS_00007808 mRNA downstream 50099 18786270 ~ 18799827 (-) False XLOC_004091
TCONS_00007813 mRNA upstream 243062 19095431 ~ 19097746 (-) True XLOC_004094
TCONS_00007816 mRNA upstream 637966 19490335 ~ 19501440 (-) False XLOC_004097
TCONS_00007817 mRNA upstream 642570 19494939 ~ 19501439 (-) True XLOC_004097
TCONS_00007818 mRNA upstream 659273 19511642 ~ 19598809 (-) False XLOC_004098
TCONS_00007819 mRNA upstream 662512 19514881 ~ 19585859 (-) False XLOC_004098
TCONS_00007803 other downstream 245491 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007777 other downstream 941244 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 2205413 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 2513040 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 2722248 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007814 other upstream 328083 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 563809 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 2727557 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 2900106 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007863 other upstream 3744745 22597114 ~ 22599555 (-) True XLOC_004120

Expression Profile

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