RNA id: TCONS_00007856


Basic Information

Item Value
RNA id TCONS_00007856
length 899
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_004118
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 22287954 ~ 22361306 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACGACAAGTGTGTGCAGCTATGAGAGATTCAGACGCCAGTATGAAAGACACTAATAAAACCTATGCCATCGTGGAGGTTATTGATGGAGAGAAGATTCAGCTGCTCCCATTGTCCAGCAGTCATTTGGATGTGTACACGGGGCCCGGTATGTCTGGATCTGCAATAGCCATGACCAGCAACTCCTGCCCTGCGAATCTAGCCATCAAGAGAGAGCTGTCAGAAGCTCGTGCAATGGCCAAAGAAAGACAGAAGAAAGACAACCACAACCTGATTGAAAGGAGGAGAAGGTTTAACATCAATGATCGAATTAAGGAGCTGGGCACCATGATCCCCAAAACCAACGACCTGGATGTACGCTGGAATAAAGGCACTATTCTGAGGGCCTCTGTGGATTATATTAAACGCATGCAGAAGGATGTCCAGAGAACCAGAGAGGTGGAGAACAACTTCAGGAGGATGGAGATGGCTAACAAACAGCTGTGGCTCCGCATTCAGGAGCTAGAAAGACAAGCCCAAATCCACGGCCTCCCCAGCAACTCCCCATCTGGCCTGACCAACACTGACCACCAAAACCCCTTCATCAAGCAAGAAAGCAGCCCTGAGGAGAACCACCTCCAGCACCAGTCCCATCTGCCTCCTCGCTACCCCCAGCAGCACCCTCAGCCTCACCCTCAGCTCCACCAGCACCAGCACCTCCACCCTCAGCCCCCGCTGCAGTACCCAGCCGTGGGCAGCTCTCAGCACTTTGACTTGGCCCAGTCTCTGGACTTGTGCGATGGAGGCATCCCAGGATACCAAGATGGCCTGGGGGATCTGGGGTTTCTGGGTGGAGGCATTGCGCAGATGGGAAAGAAGAGTGAGCTGAGCTTCTTGCTGATGGAAGAGGCTCTGTCTCC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006959 humoral immune response biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0022010 central nervous system myelination biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04137 Mitophagy - animal
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-090807-3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within central nervous system myelination. Predicted to be active in nucleus. Is expressed in several structures, including head; immature eye; mesoderm; pancreatic system; and pronephros. Orthologous to human TFEB (transcription factor EB).

Ensembl:

ensembl_id ENSDART00000159527

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008792 lncRNA downstream 197983 22089435 ~ 22094397 (-) True XLOC_004117
TCONS_00008791 lncRNA downstream 386320 21893602 ~ 21906060 (-) True XLOC_004116
TCONS_00008790 lncRNA downstream 386341 21893602 ~ 21906039 (-) False XLOC_004116
TCONS_00008789 lncRNA downstream 386369 21893602 ~ 21906011 (-) False XLOC_004116
TCONS_00008788 lncRNA downstream 1172407 21117620 ~ 21119973 (-) True XLOC_004108
TCONS_00008467 lncRNA upstream 601521 22905199 ~ 22905900 (-) False XLOC_004121
TCONS_00008468 lncRNA upstream 606086 22909764 ~ 22912113 (-) True XLOC_004121
TCONS_00007872 lncRNA upstream 689342 22993020 ~ 23080960 (-) True XLOC_004122
TCONS_00007876 lncRNA upstream 1002077 23305755 ~ 23309318 (-) False XLOC_004125
TCONS_00007875 lncRNA upstream 1002077 23305755 ~ 23309318 (-) True XLOC_004125
TCONS_00007851 mRNA downstream 680070 21582560 ~ 21612310 (-) True XLOC_004114
TCONS_00007848 mRNA downstream 706223 21405697 ~ 21586157 (-) False XLOC_004113
TCONS_00007849 mRNA downstream 707204 21406686 ~ 21585176 (-) False XLOC_004113
TCONS_00007847 mRNA downstream 764324 21405697 ~ 21528056 (-) False XLOC_004113
TCONS_00007846 mRNA downstream 888336 21366598 ~ 21404044 (-) True XLOC_004112
TCONS_00007858 mRNA upstream 59894 22363572 ~ 22372072 (-) False XLOC_004119
TCONS_00007859 mRNA upstream 60545 22364223 ~ 22369303 (-) False XLOC_004119
TCONS_00007860 mRNA upstream 60911 22364589 ~ 22371105 (-) True XLOC_004119
TCONS_00007861 mRNA upstream 289257 22592935 ~ 22605981 (-) False XLOC_004120
TCONS_00007862 mRNA upstream 292896 22596574 ~ 22599584 (-) False XLOC_004120
TCONS_00007852 other downstream 539791 21752475 ~ 21752589 (-) True XLOC_004115
TCONS_00007850 other downstream 707219 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007815 other downstream 2876065 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007814 other downstream 3111825 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007803 other downstream 3687945 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007863 other upstream 293436 22597114 ~ 22599555 (-) True XLOC_004120
TCONS_00007873 other upstream 855511 23159189 ~ 23159307 (-) True XLOC_004123
TCONS_00007888 other upstream 1351672 23655350 ~ 23655478 (-) True XLOC_004130
TCONS_00007910 other upstream 2221998 24525676 ~ 24532958 (-) True XLOC_004138
TCONS_00007913 other upstream 2664093 24967771 ~ 24967887 (-) True XLOC_004142

Expression Profile

//