Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007862 |
| length | 1387 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_004120 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 22592935 ~ 22605981 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048743 | positive regulation of skeletal muscle fiber development | biological_process |
| GO:0014823 | response to activity | biological_process |
| GO:0014835 | myoblast differentiation involved in skeletal muscle regeneration | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007517 | muscle organ development | biological_process |
| GO:0014844 | myoblast proliferation involved in skeletal muscle regeneration | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0035914 | skeletal muscle cell differentiation | biological_process |
| GO:0045663 | positive regulation of myoblast differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:1901741 | positive regulation of myoblast fusion | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-980526-265 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of myoblast fusion; response to activity; and skeletal muscle tissue regeneration. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; musculature system; myoblast; post-vent region; and trunk. Orthologous to human MYOG (myogenin). |
| ensembl_id | ENSDART00000014062 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008792 | lncRNA | downstream | 502177 | 22089435 ~ 22094397 (-) | True | XLOC_004117 |
| TCONS_00008791 | lncRNA | downstream | 690514 | 21893602 ~ 21906060 (-) | True | XLOC_004116 |
| TCONS_00008790 | lncRNA | downstream | 690535 | 21893602 ~ 21906039 (-) | False | XLOC_004116 |
| TCONS_00008789 | lncRNA | downstream | 690563 | 21893602 ~ 21906011 (-) | False | XLOC_004116 |
| TCONS_00008788 | lncRNA | downstream | 1476601 | 21117620 ~ 21119973 (-) | True | XLOC_004108 |
| TCONS_00008467 | lncRNA | upstream | 305615 | 22905199 ~ 22905900 (-) | False | XLOC_004121 |
| TCONS_00008468 | lncRNA | upstream | 310180 | 22909764 ~ 22912113 (-) | True | XLOC_004121 |
| TCONS_00007872 | lncRNA | upstream | 393436 | 22993020 ~ 23080960 (-) | True | XLOC_004122 |
| TCONS_00007876 | lncRNA | upstream | 706171 | 23305755 ~ 23309318 (-) | False | XLOC_004125 |
| TCONS_00007875 | lncRNA | upstream | 706171 | 23305755 ~ 23309318 (-) | True | XLOC_004125 |
| TCONS_00007858 | mRNA | downstream | 224502 | 22363572 ~ 22372072 (-) | False | XLOC_004119 |
| TCONS_00007860 | mRNA | downstream | 225469 | 22364589 ~ 22371105 (-) | True | XLOC_004119 |
| TCONS_00007859 | mRNA | downstream | 227271 | 22364223 ~ 22369303 (-) | False | XLOC_004119 |
| TCONS_00007853 | mRNA | downstream | 235268 | 22287954 ~ 22361306 (-) | False | XLOC_004118 |
| TCONS_00007865 | mRNA | upstream | 291413 | 22890997 ~ 22916641 (-) | False | XLOC_004121 |
| TCONS_00007864 | mRNA | upstream | 291413 | 22890997 ~ 22916641 (-) | False | XLOC_004121 |
| TCONS_00007866 | mRNA | upstream | 321003 | 22920587 ~ 23080970 (-) | False | XLOC_004122 |
| TCONS_00007867 | mRNA | upstream | 323401 | 22922985 ~ 23025949 (-) | False | XLOC_004122 |
| TCONS_00007869 | mRNA | upstream | 327359 | 22926943 ~ 23025949 (-) | False | XLOC_004122 |
| TCONS_00007852 | other | downstream | 843985 | 21752475 ~ 21752589 (-) | True | XLOC_004115 |
| TCONS_00007850 | other | downstream | 1011413 | 21579926 ~ 21585161 (-) | True | XLOC_004113 |
| TCONS_00007815 | other | downstream | 3180259 | 19416178 ~ 19416315 (-) | True | XLOC_004096 |
| TCONS_00007814 | other | downstream | 3416019 | 19180452 ~ 19180555 (-) | True | XLOC_004095 |
| TCONS_00007803 | other | downstream | 3992139 | 18591999 ~ 18604435 (-) | True | XLOC_004089 |
| TCONS_00007873 | other | upstream | 559605 | 23159189 ~ 23159307 (-) | True | XLOC_004123 |
| TCONS_00007888 | other | upstream | 1055766 | 23655350 ~ 23655478 (-) | True | XLOC_004130 |
| TCONS_00007910 | other | upstream | 1926092 | 24525676 ~ 24532958 (-) | True | XLOC_004138 |
| TCONS_00007913 | other | upstream | 2368187 | 24967771 ~ 24967887 (-) | True | XLOC_004142 |
| TCONS_00007916 | other | upstream | 2605569 | 25205153 ~ 25205243 (-) | True | XLOC_004144 |
