XLOC_004090 (id1)


Basic Information

Item Value
gene id XLOC_004090
gene name id1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18704191 ~ 18705303 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007804
GCCTCTGAGAGCATGTGGTGAACTGTCATCGCACTATCGACAACTCAACAAGCCTTTAAAAGGAGTACGAGCACCTCGCTTCAGCTATTCCTCTTTGACTTACTCGCAAATAGCCAAAATGAAAGTTGTGGGACCTACCTGCGCGCTGAAGAGCAGCAAAGTTGGAGGAGAGGATGTTGTCCGCTGCCTCTCCGATCAGAGCTTGGCCATCTCCAAATGCAAGATCCCGCTGCTGGACGAGCAGATGACCATGTTTCTCCAAGACATGAACAGCTGCTACAGCAAACTGAAGGAGCTGGTGCCCACGCTACCGACCAACAAGAAAGCCAGCAAGATGGAGATTCTCCAGCATGTCATCGATTACATCTGGGACTTGCAGGTCGAGCTGGAGAGCAAGAAGAACCAGAGCTCCGCTCCCCGCACTCCGCTCACAACACTCAACGCGGAGCTAGCCAGCATCTCTGTGGAGAACGGCTGTTCAGATGACCGGATCATGTGCCGTTAAAGCAGATACTCCCGGTGGCTTCACGTCAACAGATCATCGAAGCATCGTGATCACGGTGCGCTGAggtgaacgaacaaacaaacccCGATGGACCAGTGACGCCGTGAACTGTGTCGGGAGAGTCTCATTCTCCTGTTGTAGAGGAAACAAACTTTCAGTAGAGAGTCACACAAATCTGTGGACATGACAAGCGTGACGTGCTCTCTCCTTCTCTGAGATCTCTCCCCGGACACACACCGAtacgcgtgtgtgtttgtgtctgtgtttagCTGTGGAATCCATGGCGATTATTCACTTACTGTTCATGCATTTCCCTCTCGGTCAAAGTTTCTCCaatgtttttgtaactttttagaaaaaaatactattttgttgTCAGATTTCTCAGATTACTGAGCGAAAGAATGTATTGTATATTACAATGCCATATGATGTGAacgctttattgtgttttttacaatgtatattgtgttttttttattaaaacatgaaaATCAAACT

Function

symbol description
id1 Predicted to enable protein dimerization activity. Acts upstream of or within negative regulation of neurogenesis and regulation of neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including brain; ectoderm; germ ring; mesoderm; and pleuroperitoneal region. Orthologous to human ID1 (inhibitor of DNA binding 1, HLH protein).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04350 TGF-beta signaling pathway
ko04390 Hippo signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-990415-96 Predicted to enable protein dimerization activity. Acts upstream of or within negative regulation of neurogenesis and regulation of neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including brain; ectoderm; germ ring; mesoderm; and pleuroperitoneal region. Orthologous to human ID1 (inhibitor of DNA binding 1, HLH protein).

Ensembl:

ensembl_id ENSDARG00000040764

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007804 True 1006 mRNA 0.47 2 18704191 18705303

Neighbor

gene id symbol gene type direction distance location
XLOC_004089 zmynd8 coding downstream 99649 18560667 ~ 18604542 (-)
XLOC_004088 dido1 coding downstream 146262 18531984 ~ 18557929 (-)
XLOC_004087 fgd5a coding downstream 235621 18395879 ~ 18468570 (-)
XLOC_004086 prkcdb coding downstream 319657 18343890 ~ 18384534 (-)
XLOC_004085 SFMBT1 coding downstream 381132 18283948 ~ 18323059 (-)
XLOC_004091 pfkfb2b coding upstream 79544 18784847 ~ 18819178 (-)
XLOC_004092 NA coding upstream 144623 18849926 ~ 18852369 (-)
XLOC_004093 NA coding upstream 383111 19088414 ~ 19091101 (-)
XLOC_004094 rhol coding upstream 390128 19095431 ~ 19097746 (-)
XLOC_004095 CT737428.1 coding upstream 475149 19180452 ~ 19180555 (-)
XLOC_004063 CR854846.1 misc downstream 2576513 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 6012500 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 6082424 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 6112895 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 6190929 12512966 ~ 12513262 (-)
XLOC_004082 LO018315.7 non-coding downstream 555703 18144285 ~ 18148488 (-)
XLOC_004078 CR589944.2 non-coding downstream 795509 17906902 ~ 17908682 (-)
XLOC_004073 NA non-coding downstream 1474338 17223850 ~ 17229853 (-)
XLOC_004072 CR769769.3 non-coding downstream 1556730 17144309 ~ 17147461 (-)
XLOC_004071 CR769769.2 non-coding downstream 1606258 17093753 ~ 17097933 (-)
XLOC_004096 BX511159.1 non-coding upstream 710875 19416178 ~ 19416315 (-)
XLOC_004104 NA non-coding upstream 2246753 20952056 ~ 20953249 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G250299 NA non-coding CI01000058 null 4407854 ~ 4408916 (-)