XLOC_010130 (elp6)


Basic Information

Item Value
gene id XLOC_010130
gene name elp6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38350704 ~ 38359637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020101
TAATGCGGCTTCCGTACACACGTTGActagcagaaaaacgaaaaacgTAAGCAATttctttacttttgtttgttattaataTAAAAGCAACTGATGTCAaagcatatacaaaaaaaaaaaaaacattctctaaCTTGATTTCTTGAATGCGTATACAACGCAAATATTCATTTAGCATCACAACTACTCTGCTAGTTATACTCTGGATAGTATGAAAGTGAATTCGCTGCTCGTGTTTACAGTCATGTTTTTGCTAGCATGAGAAATACTAAATATTTGAACGAGTAAAGAGGAGACTGAAGCAAAATCTACTTTAACTGTCAAGTTAATCTCTGAGGTTACCACAGAAATGTTTCCTGAATTGAACAGTCTTCTCAATGCTTCTCCAGACACTTTCAAACCTGGGGACTTTATCCTGCTGTCTGACAGACAAGCTGATGCATCGTTTCTCATTCATCACTATCTGTCTTTCTATTTACGTGCTGGCTGTAAGGTGTGTTTTCTGGGTCTTGTACAGTCCTTCAGCCACTACAGTGCTGTCGGTCAGAGGCTGGGAGTGAGTTTGACCCAGGCGAGAGAAAAAGGCCAGCTAGTCTTTCTGGAAGGACTGAAGGACTCTATTGGAGCTATTTTAAAGGAGGACACCAGTGAGGGGACACAAGCTTTGAGTTATCTCAGgtCTCCTCGTGCTGGACTGGAAGGCCTCTTCAGATTTGTGGAAAGTTCATTGTGTCAGAGCGGAGATGACGGTCCTCCAGTGTTGATCATTGATGATCTAAGTGTGCTTTTGAGTTTAGGTGTCAGTGCTGGAGCAATACTAGACTTTACTCTCTACTGTCGAGCCACTGTGTGCTCCGAGTTACAGGGAAATATGGTGATTCTGGTGAGGTGTGAAGAGGaggatgctgatgatgatgaagagggaTTAAACCTGCTCCAGAGGGGACTAGTTCATCAGTGTCATCTGGCCTTACATGTGGAGGGTTTACCTACCGGCTACTGCAGGGACATACACGGACAG
>TCONS_00020102
ACGTTGActagcagaaaaacgaaaaacgTAAGCAATttctttacttttgtttgttattaataTAAAAGCAACTGATGTCAaagcatatacaaaaaaaaaaaaaacattctctaaCTTGATTTCTTGAATGCGTATACAACGCAAATATTCATTTAGCATCACAACTACTCTGCTAGTTATACTCTGGATAGTATGAAAGTGAATTCGCTGCTCGTGTTTACAGTCATGTTTTTGCTAGCATGAGAAATACTAAATATTTGAACGAGTAAAGAGGAGACTGAAGCAAAATCTACTTTAACTGTCAAGTTAATCTCTGAGGTTACCACAGAAATGTTTCCTGAATTGAACAGTCTTCTCAATGCTTCTCCAGACACTTTCAAACCTGGGGACTTTATCCTGCTGTCTGACAGACAAGCTGATGCATCGTTTCTCATTCATCACTATCTGTCTTTCTATTTACGTGaaaatgtcATATTggacacacatgcacatttacTCAAAAGAGAATAACCTCCAAAATGGAaatatt
>TCONS_00020103
ATGTTTCCTGAATTGAACAGTCTTCTCAATGCTTCTCCAGACACTTTCAAACCTGGGGACTTTATCCTGCTGTCTGACAGACAAGCTGATGCATCGTTTCTCATTCATCACTATCTGTCTTTCTATTTACGTGCTGGCTGTAAGGTGTGTTTTCTGGGTCTTGTACAGTCCTTCAGCCACTACAGTGCTGTCGGTCAGAGGCTGGGAGTGAGTTTGACCCAGGCGAGAGAAAAAGGCCAGCTAGTCTTTCTGGAAGGACTGAAGGACTCTATTGGAGCTATTTTAAAGGAGGACACCAGTGAGGGGACACAAGCTTTGAGTTATCTCAGgtCTCCTCGTGCTGGACTGGAAGGCCTCTTCAGATTTGTGGAAAGTTCATTGTGTCAGAGCGGAGATGACGGTCCTCCAGTGTTGATCATTGATGATCTAAGTGTGCTTTTGAGTTTAGGTGTCAGTGCTGGAGCAATACTAGACTTTACTCTCTACTGTCGAGCCACTGTGTGCTCCGAGTTACAGGGAAATATGGTGATTCTGGTGAGGTGTGAAGAGGaggatgctgatgatgatgaagagggaTTAAACCTGCTCCAGAGGGGACTAGTTCATCAGTGTCATCTGGCCTTACATGTGGAGGGTTTACCTACCGGCTACTGCAGGGACATACACGGACAGATGGAGGTTTGGTGGCGACAGGGGGAAAACGATGCTTACAACCAACGGAAAATATTTCAATTCAAAGTTCACGATAAAGGAGCTTCGTTTTTCACCCGAGGGACTTCTAGAGCAGTTCTCTGAGTTCTTACatgaaatatttattgtttaggtctcttatttaaaattatttcatgactattttttttattaaaagacaTCTTTAGTGCATTACTGTTTTTagtggttttgtttatttgttgtattattttctattttcgtTTTGTGTACCAAAATGGACCACCATTCAGTGTGCAAACATGCATTTAAAGCTGGAACAATAATGCTTGTAAACGTCTTTCTTTAAAGACACAGAAAAAGGACAGATACATGGATCAGTCATGcacaaaagttatttaaatgttcaattcaagtttactAGAACAGCGCTTTACACAATAATtatcattccaaagcagcttcacaaaaggtgcacatcATTACATTAGTCAATATTAGAAATGTTAAGAAGTTATGTAAAGGGGTTGGCAGTATATAAACGTAGTTAATCTGCAGCATTTAGTTTCACCCGTACCAAGTCACGCGTACCAATAATAATACATGTTgaagtttatttgtttaaaactttaattgaatatttaaatgtatttgatttttttccctttGGTGAAAAATCAAATGCAAGTTCTCCATTGTGGGTCCTTTCATAAGATAATTTTAAGTATATTGAGATTTTCTATGGATTAAATGTGCAGTGGCATCAAtataattaaactttaaaaaaaaaacaacatttgtaatttatttgtagCAAACGTTTAACGTTATTCAACTTATGAACAGCACATTTCAATCACTATTGTAAATTTACAAAAGAGGACACTGTTGCGTTGATGATAATGATTATTAGGGTTAGCAGCAGCACATTAATTTGAACAAAAATTACATGAGGTTACAAAGGATTTCTATTTTTAACTCTTTTGAAATTTCAAAATTAAcaatccttcaaaaaaaaaaaaaaaaaaaagtggtatgCACAAAAACATGAAGCACCACTCATTTTTTCAACACTGAGAAGCAgactttatcaaataaataaattagaatgaTTTCAGATCATGGCAAAAGATAAAGtaataattcacatttttaaatacataacaaaagttttttttaaataatcaaaatgtgATGCAGACTTGCTTAGAATATTTCACAGAGCGTGTCGAGACTTGTGCTCTCAATCACGCCCACTGATATATAGCCAAACAAAAGCACTTATGCTACTTGATGTTGAGaacttgtatttaaatgtattgtcaTAACTACATGGTTTTTGTAGCACGAGTAGTTTGCTACTGcaattttattctttattcttaCACGTTTACAAATATCAGCAAATGAATCTGGCAAAGGAATGAAAGGGATAGTAGCCTACATTCAAAAATGAATCTCTCAacatttactctttactttatccaatcctttttgagtttctttcttctgttgaatacaaaagaagatattttgaagtatgctggaaacctgtaaccattgatttccatagtagtaaaaataaatactatggatgttTAAACAAAGAGGAATGGATTAAACTGCTGCTTAACTCTCAACTGCTCCTCATCCACCAATCAGTGTGAGCAGTCAATGATTGGCAACAGGTGATGGCCATTATAATTTTTTGTAGTAAAGTAAATGAGGCTGCACCCAAAATCGCCCCCTAtggaccttattctgcaatgccgATGTAAACTCTTTTCTGCAAATGTTTAAGAACTTCGGATTCAGTTGTCTATGAACAAAAATTACAAGGAATAATAAATAGAAGAAAACGGTTAAACTACTTGCTCTATAAACAACCATGTTAAccacaatacataaaaatattagacaaaatcagtttaaaacattcagcagaatgaactatttatcaaaaaataaatggaagtggaCTAAATCTCAAGTCAATAAGATTAAAAATGGCTGCCCTTGCTATTACGCGAGAATAAGGTTAATAGCCCCGTTCACTTAATTATGCCTTTACGAGATGTGGtttgccataaaaacaaatgcCCATGATTCCAGCCTTTCAACAGTGACATTTACAATAAACTGAGCTCaatcagttttaatttaactAGAACATCAACCAGCATTGAGCATTCTACCAGTAATCATCTGCTTGCCTGATATGTTGGAATGTTTCCACAATTTGAAATACTGTTATGGCGTGTTATAATCTTCAACTATTTTAAGCTGCTTTAGCACAATCTACAAagtaaaaagtgctatagaaatacatATGAATAGAACTTAATTGAGCAAAGCCATCTGAGCCCAGAGAAGAAGCTGCAACATGAGGCCCTTTGAACCCAGGGGTGGAGCTGCACCAGGGGACCCACTGAGCCCAGAAATATAGCTGCGTCACATGGTCCACTGAGCCCAGAGGTGGAGCTGCTTATTTTATTTGACTGTTTATTGGTTTACTGTCATCATACTGAGTTGCTTGATATATGGTACACAATTGAGGCAAAGAATGATCAAGTAAAAAGCGGTATAGAAATAGAGATGGAATAAAATTGAATTGAACAAAGCCCTCTGAGCACAGGTGTGGAGCTGCACCAGGGGACCCACTGAGCCTAAATGTGGATCTGCGCAACAAGGTTCACTGAGCCCAGAGGTGGAACTGTGCCTTATGCTCACTGAGCCCTGAAGTAGAgttgattattttatttgactgtttatttgtttactgtcCTTATACTCAGTTGCTTGATATTTGGTACCCAAATGAGGCAAAGAATGATTAAGTAAAAAGCGGTATAGAAATAGAGATGGAATAAAATTGAATTGAACAAAACCCTCTGAGCCCAGAGTAGGAGCTGCACCAGGGGACCCACTGAGCCCAAAGGTGGAGCTGTGCAACAAGGCTCACTGAGCCCAGAGGTGGATTTGCGCCATAAGGCCCACTGAGCCCTGAAGAGGAGTTGCTTATTTTATTTGAGTGTTTATTCGTTTACTGTCATTATACTGTTACATGATATTTGGTAACCAATTGAGGCAAAGAATGACTAAGTAAAAAGTGTTCTAGAAATACAGATGGAATAAAATTGAATTGAACAAACCCCTCTGAGCCCAGGTGTGGAGCTGCACCAGGGGGCCCACTGAGCCTAAAGGTGGAGCAGCACCACAAGACTCACTAGGCCCTAAAGTGGAGCTGCCTATTTTATTGGACTGTTTATTAGTTTACTGTCATTATACTGAGTTGCTTGAAATATGGAACCCAACTGAGGCAAAGAATGACTAAGTAAAAAGCGGTATAGAAATAGAGATggaaaaattaatttgaatttaacGAAGCCCTCTGAGCCCAGAGTAGGAACTGCACCATGAGGCCCTCTGAGCCCAGAGTAGGAGCTGCACCATGAGGCCCTCTGAGCCATTTGAGGCAAAGAATGATTAAGCAAAAAGCGGTATAGAAATAGAGATGGAATAAAAGTGAATTGAAAAAAGCCCTCTGAGCCTAGAGTAGGAGCTGCACCAGGGGACCCACTGAGCCCTGAAGTgaagctgtttattttatttgactggTTATTTGTTTACTGCCAGTATACTGAGTTGCTTGATATATGATACCCACTTGATGCAAAGaatgatttgaatttaaatgattCTGCAGAAGATAAACAAACTTTCTGTTCTGAATATATGTCCTACTTTTTCTGTTTCTGGAATATGTGCTATTCTGAATATTTGTCCTACCTTTTCTGTTTCTAAAAGAGTCATTTACCACCAATATGGC

Function

symbol description
elp6 Predicted to be involved in positive regulation of cell migration. Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be part of elongator holoenzyme complex. Orthologous to human ELP6 (elongator acetyltransferase complex subunit 6).

GO:

id name namespace
GO:0002098 tRNA wobble uridine modification biological_process
GO:0008033 tRNA processing biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0033588 elongator holoenzyme complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060825-249 Predicted to be involved in positive regulation of cell migration. Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be part of elongator holoenzyme complex. Orthologous to human ELP6 (elongator acetyltransferase complex subunit 6).

Ensembl:

ensembl_id ENSDARG00000060445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020101 False 1021 mRNA 0.43 6 38350704 38355340
TCONS_00020102 False 529 processed_transcript 0.34 3 38350723 38352278
TCONS_00020103 True 4498 mRNA 0.38 7 38351053 38359637

Neighbor

gene id symbol gene type direction distance location
XLOC_010129 gabpb2b coding upstream 3148 38337783 ~ 38347556 (+)
XLOC_010128 bnipl coding upstream 51060 38277339 ~ 38299644 (+)
XLOC_010127 prune coding upstream 83819 38240027 ~ 38266885 (+)
XLOC_010126 myo1eb coding upstream 111795 38201840 ~ 38238909 (+)
XLOC_010125 pi4kb coding upstream 150181 38159758 ~ 38200523 (+)
XLOC_010131 zgc:113232 coding downstream 365 38360002 ~ 38389883 (+)
XLOC_010132 cd83 coding downstream 34734 38394371 ~ 38397359 (+)
XLOC_010133 emc2 coding downstream 299838 38659475 ~ 38729606 (+)
XLOC_010134 NA coding downstream 372150 38731787 ~ 38733942 (+)
XLOC_010135 trhra coding downstream 459227 38818864 ~ 38826777 (+)
XLOC_010122 CT025591.1 non-coding upstream 329570 38021019 ~ 38021134 (+)
XLOC_010119 BX294107.1 non-coding upstream 579104 37771483 ~ 37771600 (+)
XLOC_010118 NA non-coding upstream 637067 37713264 ~ 37713637 (+)
XLOC_010117 NA non-coding upstream 690093 37659520 ~ 37660611 (+)
XLOC_010116 NA non-coding upstream 708841 37633447 ~ 37641863 (+)
XLOC_010142 NA non-coding downstream 1264487 39624124 ~ 39627370 (+)
XLOC_010143 NA non-coding downstream 1268076 39627713 ~ 39628196 (+)
XLOC_010144 NA non-coding downstream 1271973 39631610 ~ 39632068 (+)
XLOC_010145 NA non-coding downstream 1497548 39857185 ~ 39901940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_02454540_02455751 ELP6 coding CI01000016 null 2454540 ~ 2455797 (+)