CI01000016_02454540_02455751 (ELP6)


Basic Information

Item Value
gene id CI01000016_02454540_02455751
gene name ELP6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2454540 ~ 2455797 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02454540_02455751.mRNA
AGTGACTTCATCCTGGTGTCTGACAGACAAGCTGATGCATCATTTCTCATTCATCACTACCTGTCTTTCTACTTACGTGCTGGCTGTAAGGTGTGTTTTCTGGGTCTTGTTCAGTCCTTCAGCCACTACAGTGCTGTCGGTCAGAGGCTGGGAGTGAGTCTGACCCAGGCAAGAGAGAAGGGCCAGCTAGTGTTTCTCGAAGGACTGAAGGACTCTATTGGAGCACTATTACAGGAGGAAAGCAGTGCTGGACTGAAAGGTCTGTTCAGATTTGTGGAAAGTTCTGTGCGTCAGAATGGAGGACGTGATGATGGTGAATCATGGGGTCCTCCAGTGTTACTCATAGATGAACTCAGCGTGCTCCTGAGTTTAGGTGTTACTGCTGGAGCAATACTAGACTTTACCCTCTACTGCCAAGCCACCGTGTGCTCTGAGTTACAGGGAAATATGGTCATTCTGGTGAGATGTGAGGAGGAGGATGCAGATGATGATGAAGAGGGATCAAACCTGCTCCAGAGGGGACTAGTTCATCAATGTAACTTGGCATTACATGTAGAGGGGTTACCCACGGGTTACTGCAGGGACATACATGGACAGATGGAGGTTTGGTGGCGACAGAGTGGAGAGACCATGTACAACCAACGAAAAATATTTCATTTTAAGGTCTATGATAAAGGAGCGTCATTTTTCGCTCGAGGGACTTCTAGTGCTGTTCTCTAAGTTTTCAAACGAAAGTCTAAGTCTTTACATTGAATCTCTAACTGAA

Function

symbol description
elp6 Predicted to be involved in positive regulation of cell migration. Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be part of elongator holoenzyme complex. Orthologous to human ELP6 (elongator acetyltransferase complex subunit 6).

NR:

description
Transmembrane protein 103

GO:

id name namespace
GO:0030335 positive regulation of cell migration biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02454540_02455751.mRNA True 766 mRNA 0.47 6 2454540 2455797

Neighbor

gene id symbol gene type direction distance location
CI01000016_02448039_02451863 GABPB2B coding upstream 2221 2448039 ~ 2452319 (+)
CI01000016_02442140_02442481 NA coding upstream 12057 2440075 ~ 2442483 (+)
CI01000016_02415346_02420145 BNIPL coding upstream 34395 2415346 ~ 2420145 (+)
CI01000016_02406070_02411794 PRUNE coding upstream 42234 2406070 ~ 2412306 (+)
CI01000016_02385791_02400026 MYO1EB coding upstream 54088 2385791 ~ 2400452 (+)
CI01000016_02457241_02465191 ALDH5A1 coding downstream 1444 2457241 ~ 2465795 (+)
CI01000016_02480180_02482592 NA coding downstream 24383 2480180 ~ 2482998 (+)
CI01000016_02528921_02540450 NA coding downstream 72349 2528146 ~ 2540652 (+)
CI01000016_02559364_02565395 CALB1 coding downstream 103567 2559364 ~ 2566106 (+)
CI01000016_02576551_02588698 PIK3R4 coding downstream 120754 2576551 ~ 2589120 (+)
G94729 NA non-coding upstream 96432 2357488 ~ 2358108 (+)
G94726 NA non-coding upstream 120948 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 183406 2199008 ~ 2271134 (+)
CI01000016_02220464_02221013 NA non-coding upstream 229721 2220464 ~ 2221030 (+)
G93779 NA non-coding upstream 349407 2104906 ~ 2105133 (+)
G94848 NA non-coding downstream 47330 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 52846 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 88954 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 235886 2691683 ~ 2692011 (+)
G94901 NA non-coding downstream 277951 2733748 ~ 2734245 (+)
G93406 NA other upstream 1527008 905400 ~ 927532 (+)
G95439 NA other downstream 1406378 3862175 ~ 3862305 (+)
G95648 NA other downstream 1816839 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2378761 4829592 ~ 4837457 (+)
G95792 NA other downstream 2764083 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2950072 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010130 elp6 coding NC_007127.7 CM002900.2 38350704 ~ 38359637 (+)