CI01000016_02448039_02451863 (GABPB2B)


Basic Information

Item Value
gene id CI01000016_02448039_02451863
gene name GABPB2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2448039 ~ 2452319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02448039_02451863.mRNA
ATGTCGCTTGTGGATTTGGGAAAGCGTTTGTTGGAGGCAGCGCGCAAAGGACAGGATGATGAAGTGAGGTCACTTATGGCCAATGGAGCTCCTTTTACTACAGACTGGCTGGGAACCTCGCCACTTCATTTAGCAGCTCAATATGGGCACTACTCCACCGCTGAGGTGCTTCTCCGTGCCGGCGTTAGTAGAGATGCCCGCACTAAAGTGGATCGGACCCCCCTCCACATGGCTGCGGCAGAGGGCCACTCAAGCATTGTTGAATTATTGGTCAAGAGTGGAGCAGACATCAATGCCAAAGACATGCTGAAAATGACCGCCTTGCACTGGGCTACGGAACATGGGCACAGGGGGGTTGTGGAGCTATTAATCAAATATGGTGCTGATACCCACGCCCTCAGCAAGTTTGACAAGACGCCTTTTAACATTGCAGTGGACCGAGGAAACACTGAGCTGATGCTCTTGTTACAGGAGGGAATGCAGAACCAAGTGAACATGAATCCAGAAAGGACAATCCTAAGCAGCACATCACCTGCCTCTGCCAGCCCTCAGTTCATCATCTCCTCCTCTGGAGTGGTCAATCTCTCTGATATTGTTCTCACCAATGCTAAGGCTAACACAGGAGCTTCAGAGAGTGTGATTGCTGCTGATTCAGTGGATTCTGCCATCCAGCATCTTGTAGGGGAAGATGGTCAGAGAGTCATCACCATAGTAACTGACCAACAGGGAAACCTGCAGCCTGGCAACTTGGGACAGAAATTCTTTGTCACAATGCAGGGGCAGCAAATGCCCGCGGGTCAGATAGCAGAAGAAATCATAACAGAGGACACCAAACCAGTTCCAACGCGGAAGCGGAAATTCGAATCAACCGTCAACCACACAGATGTCAAACATAAGGAACTCGATGAGAAGGACAGTAGGGAATTACTGGAACAGCAACTAAAAGAGGCAAACAGAAAAGCACAGGAATACCGACAGCAGTTACTAAGAAAGGAACAGGAAGCTGAGCAGTACAGGCTTAAACTAGAAGCCATCGCCAGCGGGCAGACCAATGGCACCAGCACAGAGCCCCAAGAGGAAGTGGTGCTCCAGGAAGAGGAAGAGGAGGAGGTGGTCAGTGAAGAGGAAGTTGTCATGTTGCCGGAAGGGGCCATAATCATTAAAGAGGAACCCCTTGATTCAACAGCAGGAGAAACAGTGACATTAGTAGAGGCGGCAGATATCACAGCCACTTCTGAGGGCACGCCGTAGCAGTGAACCCAAAGACTCAAACACTCAGGAATTACATACACTCTTCTAGTCTGTGTACCTGGAGTGGCATGTTGTATTTATTTATTGTAAATCATAACCTTTTGTTTTATCCTTTTTTTTTTTTTTACTCGTAGCATTCAGTTTCTGTACAGACCTCTACAAAGACGTAGCATGAACTATAAATAGGTGGCCATAACGATGCTGAGCTGCTCAGATTGGCAGAATAGGAAGATCAGGTGTGTTCTTTTAACAAACAGCGGTGCAAGTCATGTAAGTTTTAGTGATGATGCTTTCCAATCAAGGCCTATTATGCAACTCCAGTGCATACTATACTATTAGTACGCACAATAGTGTACTTAAAGGAATGTTCCAGGTTCAATACACACCATTTTGACTCGTCCTTTTCTAGTTTTATTTTTTAAAAATGCAAGTTGTGGTTATAGTAAGGCACTTTTA

Function

symbol description
gabpb2b Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human GABPB2 (GA binding protein transcription factor subunit beta 2).

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02448039_02451863.mRNA True 1707 mRNA 0.47 7 2448039 2452319

Neighbor

gene id symbol gene type direction distance location
CI01000016_02442140_02442481 NA coding upstream 5556 2440075 ~ 2442483 (+)
CI01000016_02415346_02420145 BNIPL coding upstream 27894 2415346 ~ 2420145 (+)
CI01000016_02406070_02411794 PRUNE coding upstream 35733 2406070 ~ 2412306 (+)
CI01000016_02385791_02400026 MYO1EB coding upstream 47587 2385791 ~ 2400452 (+)
CI01000016_02374077_02383616 PI4KB coding upstream 63551 2373943 ~ 2384488 (+)
CI01000016_02454540_02455751 ELP6 coding downstream 2221 2454540 ~ 2455797 (+)
CI01000016_02457241_02465191 ALDH5A1 coding downstream 4922 2457241 ~ 2465795 (+)
CI01000016_02480180_02482592 NA coding downstream 27861 2480180 ~ 2482998 (+)
CI01000016_02528921_02540450 NA coding downstream 75827 2528146 ~ 2540652 (+)
CI01000016_02559364_02565395 CALB1 coding downstream 107045 2559364 ~ 2566106 (+)
G94729 NA non-coding upstream 89931 2357488 ~ 2358108 (+)
G94726 NA non-coding upstream 114447 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 176905 2199008 ~ 2271134 (+)
CI01000016_02220464_02221013 NA non-coding upstream 223220 2220464 ~ 2221030 (+)
G93779 NA non-coding upstream 342906 2104906 ~ 2105133 (+)
G94848 NA non-coding downstream 50808 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 56324 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 92432 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 239364 2691683 ~ 2692011 (+)
G94901 NA non-coding downstream 281429 2733748 ~ 2734245 (+)
G93406 NA other upstream 1520507 905400 ~ 927532 (+)
G95439 NA other downstream 1409856 3862175 ~ 3862305 (+)
G95648 NA other downstream 1820317 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2382239 4829592 ~ 4837457 (+)
G95792 NA other downstream 2767561 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2953550 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location