G247754


Basic Information

Item Value
gene id G247754
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 931010 ~ 932181 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU281211
ATGGGCTCCTTAACATGTTTATCAGAGATGGGTTCCTTAATTATGCTTATGAAGATGAACTACCTCAACCAGTGCTGTAAAATATTCACAAAAGTATTATTTTTAAAGAATAATTTAATAAATAAATATCCAACCTCAGCTGCAGTAATAGTCCTTAAAGAAGAAGGTTTTACTCCAAGCTCAGCTGCGAACTTCAGTCACTACATTTTTTCATGCTTTGCACAGATTTGCACAAAATAAATTTGCGCAAGGCATGAGAACATTAGAATCTAATTGATCTAAAGTGGCAAACCCATTTTCATGAACAGGACAGAGGAATTTCAATGTCTTTTGCAGCGTACATGAGGTTGTCCACCAATTGCATCATCATAAACAAGCTTCTGAACTTTTTACATAGTCATCTCCTTTTCAAAATCTCATTTGCTTTATATTCAGGGATGTTATTTATTTTATAGCAATTCATTTTACACAATCAATACAACAAAATATATTGTTCTTTGTTATATCATTACCCTTGACAGTTCCGAGTATGATTGAGAAAATATAAGGCCTGGGGTTGGTTTGCTAGTGGTCATATTGTATGGGATTTTGTTGATGATTGTAAAGGGTGTTACAGAACTCCTTTATTTCATTCAGGACAATTTCTGCATGTCTTAAGGTCTTGTAAATTCCATTGTTGTATATAATAATAAAGAAAAATCAAAACTGCATTCAAAAGAGAAATATGTGAACATATATGTACATCCATTGAGAAACGTATGCACTGGAACGAGAAAGACTTTTTTTTTTTTTTTTTTGGCTTCATTTTATTTTTTTATGTGAAACTGTATTCCTATTACCAGGCCCACATGGAATCTGCAATCCAAGAACACTGCAGATTTCTGCATAAAACCATCATTCACAAAGTTCTACTGCACATCATATGTGACCCTTGTATGTTTGTTTATTAAATAATTGTGGCTAGTTTGATTACATTCAGCTACCAATAACAGGGTAACAATTAATAACTGCAATAATTATTTTCCCTGTTAATGTTCTTTTTTGTTTTGTTTTCCAGTAAAAACACATTTATTTATCTTCCTTTGAAACAATGTCTTAAATTAAGATTATCTTTCTCACCCCTTTGGTAGATGATTATTTATTTGTTTATTTCTTCTTTTAAGCAAAAACCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU281211 True 1172 lncRNA 0.32 1 931010 932181

Neighbor

gene id symbol gene type direction distance location
CI01000058_00694430_00713270 ADGRL4 coding downstream 217740 694339 ~ 713270 (-)
CI01000058_00673067_00690079 NA coding downstream 240915 672218 ~ 690095 (-)
CI01000058_00665144_00668842 NA coding downstream 262168 665036 ~ 668842 (-)
CI01000058_00599524_00634109 APC2 coding downstream 296901 599179 ~ 634109 (-)
CI01000058_00570327_00573074 NA coding downstream 357936 570273 ~ 573074 (-)
CI01000058_00958655_00993242 NA coding upstream 26440 958621 ~ 1025837 (-)
CI01000058_01143391_01218374 TTLL7 coding upstream 211163 1143344 ~ 1218374 (-)
CI01000058_01273319_01276576 UOX coding upstream 341087 1273268 ~ 1276977 (-)
CI01000058_01292655_01293207 NA coding upstream 359805 1291960 ~ 1293207 (-)
CI01000058_01317202_01318789 NA coding upstream 384949 1317130 ~ 1320180 (-)
G247738 NA non-coding downstream 136865 793931 ~ 794145 (-)
G247737 NA non-coding downstream 137390 793339 ~ 793620 (-)
G247734 NA non-coding downstream 144856 785868 ~ 786154 (-)
G247727 NA non-coding downstream 174364 756433 ~ 756646 (-)
G247726 NA non-coding downstream 175283 755505 ~ 755727 (-)
G247803 NA non-coding upstream 35888 968069 ~ 968277 (-)
G247819 NA non-coding upstream 99330 1031511 ~ 1031912 (-)
G248809 NA non-coding upstream 379678 1311859 ~ 1330868 (-)
G248885 NA non-coding upstream 426409 1358590 ~ 1368392 (-)
G247592 NA other downstream 276061 646443 ~ 654949 (-)
CI01000058_02859435_02860658 FAM72A other upstream 1926302 2858483 ~ 2861491 (-)
G250230 NA other upstream 2756462 3688643 ~ 3696711 (-)

Expression


Co-expression Network