XLOC_010178 (mtdhb)


Basic Information

Item Value
gene id XLOC_010178
gene name mtdhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41717313 ~ 41732459 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020170
GTAATCGGCGGTGGCACGCTGGGGGCAGGCGACTGGCACAGAGATGCATTTTCCTGTATGATTAATCTTAAAGAGTTGATTTTGTGAATGATTGCACGCCGGTGCCAGCACAATAGATTGCAATGGCACCGGGTTGGCAAGAGATCGCGTCGCAGCATGTGGAGCAGATAACGGGATATGTCAGAGAAAGCCTGTCCACCGGCCTCGTCTATCTGAAGTCTGAGCTGGGAATAGACTTGGGCTTGAATCCTGATCTCTGCGCTCCATGGCTGCTGCTTTTAACGGCCTGGGCCGGTCTGGTTCTCCTGCTGGTCTTATGGGTGTCCGTTTGTCGCGGTTTCTCCAAAAGACTCGCAGGGACAGAGACCGGAGACTCCGCCGAAAATACGGGTCCAGCGCAACCGGTGAAAAAGGCAGATGAGCCCAAGAGGAGGAACAGAAAGAAGAATGCAGAGAAGAAAGCACAGAGGAATGGACTTGCTGTTGAACCACAGGAGGAGGTTAAAACGGCAGACGATCAAGAACTAGCAGAAGTGAGGGCTGACAAGGGAAAGAAGAATAAGAAAAAGACAAAAGCTTCTGCAAAAGAGAAAAAATCCTCCACATCTGTTGACGGCAAAGAGCCTGATGAAGcGGTCGGGAACATGAGTGTGATGGTAAATCTGGCAGGTACCTGGGAGACCAAGGTCAGTAACCGAGAGAAGCGTCAACAGCGGCGGAAGGACAAGGCTCCAGATGACGAGTCCGGCAGCCCGGTACCATCAGCAGCTTCCGGTGCCACGGAGCAGCTCCAAACCACCCTAGAAGAAGCAGAAACTACCATCACCTCTGCTGTTTCTACACCTCCGGTCCAAAGAGTAGTGGAGGTTGACCCACCTGAAATTGAAGCAACCTTTGTACAAGACCCTGTTATTCCTCAAGTGACTCCGTGTTGGGAAGAAGTGCTGACTGTAAATGGCTCTGGCTGGAGTGATCTGGGTCTGCAGCTTCCTTCTCACATGACCAGTGTTCAGACTGAAAGCTGGACCAGTATGACCGTCCCGACTGAGCGTCAGACCAGCGAACCATCTGTCTGGCCACAAGATATGGAAGGTTCATGGACTATTGTGGATAGACCTAATATTCCTGTTACATTCAGTGGATTGCCTGCTGTGCCTGACCTAAGTTGGAGCGCTCCGCCTGCTGTGCCCGTGGATGATGAGTGGTCCGGAATAAAAAGCTCATCTGCAGACCCATCGTGTGACTGGAACGCTCCATCAGAGGAGTGGGGGAACTATATTGAGCAGCAGCCTGTGAGCGCGGCACCGCTGGAGCAACCAGGCCCTGAAGTTCTGCAGGAATCTGATGATGACAAGGATAAAGATGAATCTGGCACCCCTGGTAGCGGTAAAgctaagaagaagaaaaagaagaagaagaagcttgAGGACGCTGGACCTTCTGCTCAGCCACAGGTGAAGGCAGAAAGCATTGTGACTCTGACACCGAGCGCAACAGTAAACATCCCAGCTGCCACAGCAGGGGCACGTGTTGAAGATGCTCCACGTGTCGCACCATCAGCCCCAGTACAGACTCAACAGAGAAAGAGTGGACCTGAGCCGACCGACAAATCCAAACCTGCTCCAACACAGAAAAAAACAGACGACACCTTGGAGTCCGTCAAacccattaaaaagaaaaaagctagACGAGAGACATGAAGAAACGGATGAGACGAGACAACATATGCAATCTTGGGCTGTACAGAATTTCATACGTCCTGAGTGActcgttttgttttttttgatacCCTTCATCGAATGTGTTGTGAATCCCATCCTAGTGTCCACATCCTAATAGGTATCTCTAGATGATAATGTGCTGTAACGCTACACGTCACATGAAGGACGCTTCATTTGGAAATAGattctctttttttaatgtacgtTATTGCTAATTATACTGTCAATTTGatatgatttttatttgcagcaaaatgttttttgtaaGAAGATCCTGGTGATCCTCTGGAAAGCACTAGGGATGCATTAAGaacatttaaaggaacactccactttatcTGTTGGAAATGGGCTCATCTTACAAGTCACTAAGACCTAAATCGTTTAGCTTTAACGTTTTTGAAACCATTTAGCCGATCTCCGGGTCTGGCGAGAgtgcttttagcttagcataaatcatgaatcggattagaccattagcatcttactcaaaaaaagttttgga
>TCONS_00020171
AATCGGCGGTGGCACGCTGGGGGCAGGCGACTGGCACAGAGATGCATTTTCCTGTATGATTAATCTTAAAGAGTTGATTTTGTGAATGATTGCACGCCGGTGCCAGCACAATAGATTGCAATGGCACCGGGTTGGCAAGAGATCGCGTCGCAGCATGTGGAGCAGATAACGGGATATGTCAGAGAAAGCCTGTCCACCGGCCTCGTCTATCTGAAGTCTGAGCTGGGAATAGACTTGGGCTTGAATCCTGATCTCTGCGCTCCATGGCTGCTGCTTTTAACGGCCTGGGCCGGTCTGGTTCTCCTGCTGGTCTTATGGGTGTCCGTTTGTCGCGGTTTCTCCAAAAGACTCGCAGGGACAGAGACCGGAGACTCCGCCGAAAATACGGGTCCAGCGCAACCGGTGAAAAAGGCAGATGAGCCCAAGAGGAGGAACAGAAAGAAGAATGCAGAGAAGAAAGCACAGAGGAATGGACTTGCTGTTGAACCACAGGAGGAGGTTAAAACGGCAGACGATCAAGAACTAGCAGAAGTGAGGGCTGACAAGGGAAAGAAGAATAAGAAAAAGACAAAAGCTTCTGCAAAAGAGAAAAAATCCTCCACATCTGTTGACGGCAAAGAGCCTGATGAAGcGGTCGGGAACATGAGTGTGATGGTAAATCTGGCAGGTACCTGGGAGACCAAGGTCAGTAACCGAGAGAAGCGTCAACAGCGGCGGAAGGACAAGGCTCCAGATGACGAGTCCGGCAGCCCGGTACCATCAGCAGCTTCCGGTGCCACGGAGCAGCTCCAAACCACCCTAGAAGAAGCAGAAACTACCATCACCTCTGCTGTTTCTACACCTCCGGTCCAAAGAGTAGTGGAGGTGACTCCGTGTTGGGAAGAAGTGCTGACTGTAAATGGCTCTGGCTGGAGTGATCTGGGTCTGCAGCTTCCTTCTCACATGACCAGTGTTCAGACTGAAAGCTGGACCAGTATGACCGTCCCGACTGAGCGTCAGACCAGCGAACCATCTGTCTGGCCACAAGATATGGAAGGTTCATGGACTATTGTGGATAGACCTAATATTCCTGTTACATTCAGTGGATTGCCTGCTGTGCCTGACCTAAGTTGGAGCGCTCCGCCTGCTGTGCCCGTGGATGATGAGTGGTCCGGAATAAAAAGCTCATCTGCAGACCCATCGTGTGACTGGAACGCTCCATCAGAGGAGTGGGGGAACTATATTGAGCAGCAGCCTGTGAGCGCGGCACCGCTGGAGCAACCAGGCCCTGAAGTTCTGCAGGAATCTGATGATGACAAGGATAAAGATGAATCTGGCACCCCTGGTAGCGGTAAAgctaagaagaagaaaaagaagaagaagaa

Function

symbol description
mtdhb Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

GO:

id name namespace
GO:0045766 positive regulation of angiogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090929-2 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

Ensembl:

ensembl_id ENSDARG00000004939

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020170 False 2226 mRNA 0.48 13 41717313 41732459
TCONS_00020171 True 1364 mRNA 0.52 9 41717315 41730480

Neighbor

gene id symbol gene type direction distance location
XLOC_010177 ubxn11 coding upstream 35567 41668474 ~ 41681746 (+)
XLOC_010176 aste1a coding upstream 137498 41570653 ~ 41579815 (+)
XLOC_010175 BX005012.2 coding upstream 168876 41546763 ~ 41548437 (+)
XLOC_010174 si:dkey-11p23.7 coding upstream 196024 41517188 ~ 41521289 (+)
XLOC_010173 BX005012.4 coding upstream 243995 41465511 ~ 41473318 (+)
XLOC_010179 si:dkey-199f5.6 coding downstream 94125 41826584 ~ 41839073 (+)
XLOC_010180 scn1ba coding downstream 141249 41873708 ~ 41897745 (+)
XLOC_010181 si:ch211-225p5.8 coding downstream 241979 41974438 ~ 41984133 (+)
XLOC_010182 fli1b coding downstream 285582 42018041 ~ 42046881 (+)
XLOC_010183 BX649388.2 coding downstream 334123 42066582 ~ 42073705 (+)
XLOC_010170 NA non-coding upstream 569150 41142659 ~ 41148163 (+)
XLOC_010168 NA non-coding upstream 587993 41129064 ~ 41129320 (+)
XLOC_010166 NA non-coding upstream 662661 41036647 ~ 41054652 (+)
XLOC_010184 NA non-coding downstream 357847 42090306 ~ 42096260 (+)
XLOC_010186 NA non-coding downstream 604786 42337245 ~ 42337549 (+)
XLOC_010187 NA non-coding downstream 731550 42464009 ~ 42470156 (+)
XLOC_010191 NA non-coding downstream 788247 42520706 ~ 42521936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03898513_03905519 NA coding CI01000027 null 3897266 ~ 3906494 (-)