CI01000027_03898513_03905519


Basic Information

Item Value
gene id CI01000027_03898513_03905519
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3897266 ~ 3906494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03898513_03905519.mRNA
ACTTACCTTGACTCACAGGCTGAAAGGGTCTGTACTAAAGTTAACAATGAAGCGAACACAGCCCAGAGGGATAATAATGTGCTTCATCACATGAAACACACTGATTAGATGCTAATATCAACAACAAGGACACAAAGCAGTCAAACTAAAAGCGGCCTCAAGCTTCAAATACCCGCCGCGGCGTCACTGAAACTCTGGACTCTTTTTTTCAACCGTTATTCTAGTTCTTCCTCTGCGTTTGGCTCGCGGGCCAGGTTGAGACCGCAAGCGCCCCCTGCAGCTTGCGTCGTGAGCTGCAGGCACGCGAACCAGACCCACACCTACTTTTAATTATCATTATGAATTTAAAAATTTGAGTTACTCGCGAGACAATGCCATATTAAAATATTATACTCCACGGCTCTATTAAATTGTATACAAAATAACTCCCACTAGCATACATGTGCGTTATTCTGTCATAGCATCTATAGCTAACAGCTCAGCCTGAAGGGGCCCATTTGACATATAAAAACTTTGCATGTCCTGTACTGGAGACAATATATAATATATTTGTATTTTACACAGTATAAATTGGGTCATATATATTCATGAAAACCTACAGTAAAGTTGTGTTTATTTAGGAAGGGGGTTCCTTCCTAGTAATAATACGCCATATTTGGGGGTCCCTGGCATCAAAAACGTTTGGAAACCCCTACTCTTGGGTACACATAGCTTAACCCTGGTTGGGAGACACTGACCTAGTCCATTTTCAAAAGACTGCAAGTAAACTCAATTGCACTCCAGCCCAATAAGGGGAGCTTGTCTGCAAGTCAGTCCATGCACCTTCAACCAATGATTGAATAGAAGCAGCAATAGCAGCCGTTATCGGTGGCACGCTGGGGGTAAACTGGCAAAGCAACGTTTATTCCCGTGCAATTATCACAAAGTATTGATTTTGTGAATGATTGCACGCCGGTGCCCGCACAATAGATTGCAATGGCACCGGGCTGGCAAGAGATCGCTTCACAGCATGTGGAGCAGATAACGGGATATGTCAGAGAAACCCTGTCGACCGGCCTCGTCTATCTGAAGTCTGAGCTGGGAATAGACTTGGGATTGAATCCTGATCTCTGCGCTCCATGGCTTCTCCTTTTAACGGCCTGGTTCGGTCTAGTTTTCATGCTAATTTTATGGGTCTCGGTCTGTCGTGGTTTCTCAAAAAGACTTTCAGGGACAGAGAAAGGAGACACCGTCGAAAACACCGGTCCAGCGCAACCGGTGAAGAAGGCAGATGAGCCCAAGAGAAGGAACAGAAAGAAAAATGCTGAGAAGAAGGCCCAGAGGAATGGACTTGCTGTTGAACCACAGGAAGATGCCAAAGTATTGGATGGTCAAGAACTACCGGAAGGAAAGACTGACAAGGCAAAGAAGAATAAGAAAAAGCCAAAGCCTCCTGCAAAAGAGAAGAAATCCTCTGTATCTGTTGACGGTAAAGAACCTGATGAAGGTACCTGGGAGACCAAGGTCAGTAACCGTGAGAAACGACAACTGCGGCGGAAGGACAAGCCTCCAGGTGATGGGTCAGGCAGCCCTGTAGCAACAGCAGCTTTGACTGCCTTTAGTACCATGGAGCAGGTCCAAACCACCCCAGAAGAACCAGAAACCACCACCATCACCACCACTGTTTCTACACCTCCAGTCCAAAGAGAAGTGGAGGTTGACCCACCTGAAATTGAAGCAAGTTTTGTACAAAACAATGTCGTTCCTCAAGTGACACCATGTTGGGAGGAAGTGTTGGCTGTTAATGGTCCTGGCTGGAGTGATCTGGGCCTGCAGCTTCCTCCTCAGATGGCCAGTGTTCAGGCAGAGAGCTGGACCAGAGTGACTGTCCCTACTGAGCGTCAGACTAGTGAACTCTCTGCCTGGCCCCAAGATATGGAAGTCCCTGACCTGAGTTGGAGTGCTCCGCCTCCTGTACCAGTGGATGACGAGTGGTCTGGAATAAACAGCACATCTGCAGATCCATCATGTGATTGGAACGCTCCATCAGAGGAGTGGGGGAACTATGTTGAGCAACAGCCCACGAGCACACTGCCGCTGGAGCCGCCAGTCCCGGAAGTGGCACAGGAGTCTGATAACGAGAAAGATAAAGACGAAACAGGCGCCCCTGCAGGGGTGAGTAGAACTTTTTCAACATTCCTCTGGCTATTAGTAACAAAACTAGATCCTAAAGTTGTCGTCATCTTCACAGCCACCACCAGCTCCAGTACAGACGCAACAGAGAACAAGTGGACCCGAGCTGACTGACAAATCTGCTCCTGTACCAACACAAAGTACGTTCAACCACCATATATATATATATATATATATATATATATATATCTACCACTTACAGCACGTGTTGGAAACGAAGCACCCATTACCATATCTGAATTTCAGCTCTGGAGGCTTCCTCAGCACTTGCATACAAAAAGTTAATTTGAACAGTAATGATGGTGTCAGTTTTACCGTATCACTTCGAGCCCTCCTCATCCTTTGAAAGTGCATGCAAAATAAATTTGCTTTTGCTTAAAACAGCATCTTCTCTACATGTTGAACCAAACTCTTCCAGGCCTCAGCTACAACTACAGTGTTTGAGGGCAGGTCAAAGTAGATATTGTTGATGGCAGCCAATAAAGACCACAGTCTGGCATTATGCAAATTAGAAGCTACATTGGTTTGTGCAGAAAGTAAGACTGGAATTACTGACGACTCATTTCTGGCAGTTTAGAATCGGTTCTTTCTTTTGGGAGACAATAATTCCATTATGTACTTTGCAGACCTTTTTATATTCACAAACGGCTATATTACACACAATTTATAATTTCAAAAAATGTAATTGGGGCCCTTTTAAAGGGTTAATTCTCCCAAAAATGAAAATTCTGTCTTCATTTACTCAGCCTCATGTCGTTCCAAATCCATAAGACTTTCTTTCATCTTCAGAACACAAATGAAGATCTTTTTGATGAAATCTGAGAGCTTTCTCTCCCTCTATTGACAGCTACGTGACTACCATTTTGAAATCGAGCGGTTTAGTCCAGATTTTCTGGAGACACGATTGTTTTAACTGATGAACAGATTGAATTTAGGCTTTTATTCACATATAAACACTCATCAGCGAACATAAACAGAAGCTTAACTGAACCTGCTTGGCGTGCGAGAAAGAGCCTCATTGGTTCTCACACGTCAAGCAAAATTAAATCTGTTCATCATATAAAGCAATTGAGTCTCTTCAGAAAATTTGGTCTAAACTGCTCAATTCATATGGATTAGTTTTCTGATCTCTTTATGAACTTTTTAAATTGTCAAAGTGGTAGTTGCGTAGCTGTCAACAGAGGGAGAGAAGTCTCTCAGATTTCATCGAAAATATCTTAATTTGTGTTCTGAAGATGAACTGAAGTCTTACGGGTTTGGAACGACATGAGAGCGAGTAAATAACAGAATTTTCATTTTTGGGTGAACTATACCTTTAAAGGTTTGCAAAACACTTTTTATCTCATCTCCACCAGAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03898513_03905519.mRNA True 3533 mRNA 0.44 10 3897266 3906494

Neighbor

gene id symbol gene type direction distance location
CI01000027_03832200_03836030 NA coding downstream 60736 3831205 ~ 3836530 (-)
CI01000027_03787377_03788902 NA coding downstream 106987 3787377 ~ 3790279 (-)
CI01000027_03750919_03761043 FLI1, FLI1B coding downstream 136203 3750830 ~ 3761063 (-)
CI01000027_03694455_03710634 NA coding downstream 186227 3694227 ~ 3711039 (-)
CI01000027_03689861_03690969 NA coding downstream 206055 3689439 ~ 3691211 (-)
CI01000027_03922380_03931033 NA coding upstream 15748 3922242 ~ 3931033 (-)
CI01000027_03969492_03973741 NA coding upstream 62204 3968698 ~ 3974176 (-)
CI01000027_04008272_04011121 NA coding upstream 101686 4008180 ~ 4012622 (-)
CI01000027_04039778_04040714 NA coding upstream 132615 4039109 ~ 4040714 (-)
CI01000027_04156256_04198063 NEK11 coding upstream 249762 4156256 ~ 4198063 (-)
G140268 NA non-coding downstream 27395 3869467 ~ 3869871 (-)
G140267 NA non-coding downstream 47624 3849360 ~ 3849642 (-)
G140237 NA non-coding downstream 72828 3823904 ~ 3824438 (-)
G140262 NA non-coding downstream 91837 3802715 ~ 3805429 (-)
G140221 NA non-coding downstream 122186 3774856 ~ 3775080 (-)
G140308 NA non-coding upstream 92194 3998688 ~ 4036880 (-)
G140363 NA non-coding upstream 200409 4106903 ~ 4107518 (-)
G140370 NA non-coding upstream 206102 4112596 ~ 4112829 (-)
G141402 NA non-coding upstream 213826 4120320 ~ 4120527 (-)
G141405 NA non-coding upstream 215827 4122321 ~ 4123420 (-)
G140118 NA other downstream 312587 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1669241 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1771238 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 2577105 1302034 ~ 1321178 (-)
G141481 NA other upstream 465753 4372247 ~ 4412810 (-)
G141488 NA other upstream 600981 4507475 ~ 4508971 (-)
G141728 NA other upstream 970573 4877067 ~ 4877766 (-)
G141588 NA other upstream 1201841 5108335 ~ 5201155 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010178 mtdhb coding NC_007127.7 CM002900.2 41717313 ~ 41732459 (+)