CI01000027_04008272_04011121


Basic Information

Item Value
gene id CI01000027_04008272_04011121
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4008180 ~ 4012622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04008272_04011121.mRNA
AGTTCCTTAGACTGCTAGATCTGTTGAAGACTATAAATAAACAAATATTACCTTTGAGGCTACAAATAAAAAAAAGGAAACCAAACACAAACTCTAGCATCTTTAGAGAGAACATTCTTGGATCTCACAGAGAGACACTTGAAAATGAAGGCATGCTGACTAAACAAGATAAGCTAAGTAATGACCAAAACAAGGAACTGTCTGCTTACGTTTCCTAAATGCCTTTTTTAGTGAACTCATAAGTGCAGGTAGTTTTTTTCTAAAAGGGCCTGCTTCTGTTTATAACAGTATCACTTGTTAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGATAACAAAATTATTGTTGGTTTAACATAACTTACCTGGTTGCCTTAAAATTTTGAGTACATTGAAATTAAAAATTTGAGTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTGATGTTGTTCCACACCTGTAAGTCCTTCGTTTATCTTCAGAACACAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATTGAAAGCAAGTTAATTTAAACTTTCAAACGCCTAGAGTTATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACTTTAATGTTATGAAGCGTCGAAAATACTTTTTATGCGCCAACAAACAAAATAATGACTTTATTCAACAATATCTAGTGATGGCGATTTCAAAACACTGCTTCATGAAGCTTCGTAGCTTTACGAATCTTTTGTTTCGAATCAGTGGTTCGGAGCGCCAAAGTCAAGTGATTTCAGTAAAAAAGGCTTTGTTACGTCATAAGTGTTTCGAAATTTCAATGGTTCACTTGACTTTGGCAGTTTGATTCATGCTCGAACCACTGATTCCAAACAAAAGATTTGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCTCCCATCACTAGATATTGTTGAATAAAGTCATTATTTTGTGGGGGGTTTTGGCGCACAAAAAGTATGTCGCTTCATGACATTAAGGTTGAACTACTGTAGTCACATGAACTGTTTTAAATATAACTTTAGTACCTTTCTGGGTGTTTGAAAGTGTACATTAACTTGCTTTCAAGGCAGGCCTCGCTGAGCCATCGGATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACAAAGGTCTTACAGATGTGGAACGACATGAGGGTGAGTAATTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAATACAATGAAGGAGATTAAATAGAAACTCCAAATATTATGTTATCTGAACCACATTAATTATCTAAGTTGATTTGACAAAAGAAAAAAAGTTGTGATAACAATTCATGAAAATAATATTTACAGTGTAGAAATTATTAGTGGATGCATGAAGTCAGTAATGTGTGATGGTGAGTCAGAAATAGGAACATGTTGCAAGAAGATTTTTTCCTTTTCATAATGAATCATACATTCAGAATGTCTGCAATGGACGTGCAACAGTTCAGTAAAACTCTCGGTCTGCTGGTGGTCCTTCATAGTGCAGCTATAGCCAAAGACGATGACGGCTGGTTGATGAAAGCACCAACTGAGGTCCGGGCGATTGAGGGGTACCCGGTAGTGCTGCCCTGCTCTTTCACCCACCCGCACCACACCCATCCCTCCTCCATGCATGTGGTGTGGACCCTGGGCCACGGACAGGCTGCCACAGTTTTGTTCCGCTGCTCGAGCATGAACAACAGCCAGCAGTGCCAATCAAAGGTCAACCAGGATCAGCGCTACCGCCTGGAGGGCAACCACCGAAACCATGACATCTCACTCAGGATCAACAGCGTGACCTTGAAGGATGGCGGCCGCTATTACTGCCGTGTAGAGTTGCCAGGGCACTCCCATAGCTTTGAAAACATGCTGGGAACCCGTCTACGAGTGGAGGCTGCACCACGAATCCTGAGTTTGTCAGCTGAGGGGAGTGAAACATCTGGCTTCAAAGCCGTGTGTCACGTTCAGGGTTCCCCTCTTCCTGATGTTCAATGGATCGCACCAGATGGTGTTCTAGAGGGAGATACTTCATTCTCGCTTTCTCAGGAGGCTACCGGGCAATACCGCACTTCAAGCCAACTACTGGACGTCAAACCTGGAGGACAGTACATCTGTGCAGCTTCGAACTCTTTGGGGAAGGATCAAGCCACTCTCTATGTTTTGCCCCCCAGCCCAGAGAGGTTAACTGCAAAGAGTTCTTTCTCTCTCCTTGTGCTGCTTCTTGCTCTGGCCTTGGGGACAAAGCTGCTTTTGGCTCTGGGTGTGGGAGCTTGGGTGATCAAGAGGAGGTTTAGCAGTGTGGACCAGTGAAAATGTCACAAATGTCACGCTCACATAATCAGAACACAGTTTTCAATGCTGTTTCTTGTTCCACGTGTTAAAAATAACGGTCTTAAAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16352 SIGLEC15; sialic acid binding Ig-like lectin 15

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04008272_04011121.mRNA True 2463 mRNA 0.41 3 4008180 4012622

Neighbor

gene id symbol gene type direction distance location
CI01000027_03969492_03973741 NA coding downstream 34004 3968698 ~ 3974176 (-)
CI01000027_03922380_03931033 NA coding downstream 77147 3922242 ~ 3931033 (-)
CI01000027_03898513_03905519 NA coding downstream 101686 3897266 ~ 3906494 (-)
CI01000027_03832200_03836030 NA coding downstream 171650 3831205 ~ 3836530 (-)
CI01000027_03787377_03788902 NA coding downstream 217901 3787377 ~ 3790279 (-)
CI01000027_04039778_04040714 NA coding upstream 26487 4039109 ~ 4040714 (-)
CI01000027_04156256_04198063 NEK11 coding upstream 143634 4156256 ~ 4198063 (-)
CI01000027_04206424_04209369 NA coding upstream 192988 4205610 ~ 4209445 (-)
CI01000027_04233680_04249553 SCAP coding upstream 221020 4233642 ~ 4249553 (-)
CI01000027_04254645_04264857 NA coding upstream 241545 4254167 ~ 4264857 (-)
G140268 NA non-coding downstream 138309 3869467 ~ 3869871 (-)
G140267 NA non-coding downstream 158538 3849360 ~ 3849642 (-)
G140237 NA non-coding downstream 183742 3823904 ~ 3824438 (-)
G140262 NA non-coding downstream 202751 3802715 ~ 3805429 (-)
G140221 NA non-coding downstream 233100 3774856 ~ 3775080 (-)
G140363 NA non-coding upstream 94281 4106903 ~ 4107518 (-)
G140370 NA non-coding upstream 99974 4112596 ~ 4112829 (-)
G141402 NA non-coding upstream 107698 4120320 ~ 4120527 (-)
G141405 NA non-coding upstream 109699 4122321 ~ 4123420 (-)
G141421 NA non-coding upstream 145732 4158354 ~ 4158602 (-)
G140118 NA other downstream 423501 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1780155 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1882152 2119131 ~ 2125142 (-)
G141481 NA other upstream 359625 4372247 ~ 4412810 (-)
G141488 NA other upstream 494853 4507475 ~ 4508971 (-)
G141728 NA other upstream 864445 4877067 ~ 4877766 (-)
G141588 NA other upstream 1095713 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1436704 5447424 ~ 5450461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010174 si:dkey-11p23.7 coding NC_007127.7 CM002900.2 41517188 ~ 41521289 (+)