CI01000027_03922380_03931033


Basic Information

Item Value
gene id CI01000027_03922380_03931033
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3922242 ~ 3931033 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03922380_03931033.mRNA
ATGAGCTCACCGCTGTCCACCCTGAGGAAGAACAAAAGAGCCCCTCTACCAGAGATACAGAGTGATGATGGGGAAAGAAAGCCTTACAAAGAAAGGTCAGACACTGACTATGAGGCTACATTATTCCGAGACATTTTCCCACAAAACCAGCAAGTGCCACACATTATGGACAATCTTTCCACTGTAAGATCAAAGAGCATGCCAAAGAAGGCGGCAAAAGAAGCTCCACCGAGTGATTTTGAACTGATGTCAAGTATGATGCAGAAGATCAGTCAGCTTGAGAGAAAGGTGAAAACTCAGGCTGTGGATATAGAGCATAAAGCAAGAAGAATAGCAGTTCTGGAAGAGAAACTGAATCTTCTGCAAGAGGCAAAAGAGAAGCCTGCAAGTAATGAGAACCAAGATGAAGAATTGGTTCAACTGTGCCTCAAGCTTCAAAACCAAGTGTGGGAAATGGAGAAGTTTCTGAATGATTATGGAATGATCTGGGTTGGAGGTTATGAAGAACACGACGAGCAAGCTAACAGCCAAATTCCAGCAGTAACTAGCAAGTTACGCAAGAGTTTCGAAATTAACTATGACCTGGTCATGCAGAACATTCAAGAACTGAACATTGTAGCAGGGGAAGGGGAGTCTCATGTGACTGCCATTCCTGGTGGGGCCAAACTTACCCAGAAGTCTTCCATACCTCTTTGGCTCTACAAAAATGGCATCGTCATGTTCAGTGGTCCATTCCGCTCCTATCAAGACCCAACCACACAGGTTTGCATGCAGGACTTGATGGATGGTTTTTTTCCTTCTGAGCTTCAGGAAAAGTTTCCTAATGGTGTGCCTTTCCAGGTTCATGACAAACGGGACGAGGAGTTTGTAGTTAGGCGACCATGGAGTGAGTTTCCTGGAAGAGGACAAACTATAGATGGAGCAAGAAGGCAGTCGGTGGACAGATCTGAGCAGACCATCTCCACAGCACCAAAACAGAGTCAGATACCAGGCAGAAAACTGTCTATGGAACAGTTTCTGCGAAAGCTCCCAGAGTCTGTGGTGAAGGCTGGCAAAGTGATTAGTATACGAGACTCAGTGAAGGCTCATCTACAGGGCTTCCCTGATGGTGCCAAGAGTCATTCAGCAACCACTGTGGAAACATCCGCCCTGCGGGCTTTGAGAGAACGTGAGACAGATTTGACACTATCTGCAAAAGATGTCACCACACTACGAGTGAAGTCGGAGGATGGTATGGAGACATTTATCATGAAAATGTACTTGACTGAGACTATTGGAGATCTCCGTCATTACCTGGACATGAAAAGAGGACTGGGTGCGGCGCCATATGACATCATTAGCGCATTTCCACAGCGGTGCTACAGTGATGACACCCAGACGCTACTGTCCTGTGGTCTGACTCCAAATGCAGCGCTGCTCCTGCGTCCACAAGCTTTAACTCACAGACAGTGTGGAGACACATACAGAACAACCCCAACCATTCTCATGTGATGTTAAATAACGAGCGAGCTTTATCATTAGCACACTCTCACAGCATTGCTGACTCCAAATGTCTCACTCATCATGCATCAACAAGTATGAATTTTGGAAATTGTACATTTCACTACTGATTTATCAAACATCAATAAA
>TU159388
TGACTGCCATTCCTGGTGGGGCCAAACTTACCCAGAAGTCTTCCATACCTCTTTGGCTCTACAAAAATGGCATCGTCATGTTCAGTGGTCCATTCCGCTCCTATCAAGACCCAACCACACAGGTTTGCATGCAGGACTTGATGGATGGTTTTTTTCCTTCTGAGCTTCAGGAAAAGTTTCCTAATGGTGTGCCTTTCCAGGTTCATGACAAACGGGACGAGGAGTTTGTAGTTAGGCGACCATGGAGTGAGTTTCCTGGAAGAGGACAAACTATAGATGGAGCAAGAAGGCAGTCGGTGGACAGATCTGAGCAGACCATCTCCACAGCACCAAAACAGAGTCAGATACCAGGCAGAAAACTGTCTATGGAACAGTTTCTGCGAAAGCTCCCAGAGTCTGTGGTGAAGGCTGGCAAAGTGATTAGTATACGAGACTCAGTGAAGGCTCATCTACAGGGCTTCCCTGATGGTGCCAAGAGTCATTCAGCAACCACTGTGGAAACATCCGCCCTGCGGGCTTTGAGAGAACGTGAGACAGATTTGACACTATCTGCAAAAGATGTCACCACACTACGAGTGAAGTCGGAGGATGGTATGGAGACATTTATCATGAAAATGTACTTGACTGAGACTATTGGAGATCTCCGTCATTACCTGGACATGAAAAGAGGACTGGGTGCGGCGCCATATGACATCATTAGCGCATTTCCACAGCGGTGCTACAGTGATGACACCCAGACGCTACTGTCCTGTGGTCTGACTCCAAATGCAGCGCTGCTCCTGCGTCCACAAGCTTTAACTCACAGACAGTGTGGAGACACATACAGAACAACCCC

Function

NR:

description
LOC569134 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03922380_03931033.mRNA False 1629 mRNA 0.45 13 3922242 3931033
TU159388 True 835 TUCP 0.49 7 3922396 3925572

Neighbor

gene id symbol gene type direction distance location
CI01000027_03898513_03905519 NA coding downstream 15748 3897266 ~ 3906494 (-)
CI01000027_03832200_03836030 NA coding downstream 85712 3831205 ~ 3836530 (-)
CI01000027_03787377_03788902 NA coding downstream 131963 3787377 ~ 3790279 (-)
CI01000027_03750919_03761043 FLI1, FLI1B coding downstream 161179 3750830 ~ 3761063 (-)
CI01000027_03694455_03710634 NA coding downstream 211203 3694227 ~ 3711039 (-)
CI01000027_03969492_03973741 NA coding upstream 37665 3968698 ~ 3974176 (-)
CI01000027_04008272_04011121 NA coding upstream 77147 4008180 ~ 4012622 (-)
CI01000027_04039778_04040714 NA coding upstream 108076 4039109 ~ 4040714 (-)
CI01000027_04156256_04198063 NEK11 coding upstream 225223 4156256 ~ 4198063 (-)
CI01000027_04206424_04209369 NA coding upstream 274577 4205610 ~ 4209445 (-)
G140268 NA non-coding downstream 52371 3869467 ~ 3869871 (-)
G140267 NA non-coding downstream 72600 3849360 ~ 3849642 (-)
G140237 NA non-coding downstream 97804 3823904 ~ 3824438 (-)
G140262 NA non-coding downstream 116813 3802715 ~ 3805429 (-)
G140221 NA non-coding downstream 147162 3774856 ~ 3775080 (-)
G140308 NA non-coding upstream 67655 3998688 ~ 4036880 (-)
G140363 NA non-coding upstream 175870 4106903 ~ 4107518 (-)
G140370 NA non-coding upstream 181563 4112596 ~ 4112829 (-)
G141402 NA non-coding upstream 189287 4120320 ~ 4120527 (-)
G141405 NA non-coding upstream 191288 4122321 ~ 4123420 (-)
G140118 NA other downstream 337563 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 1694217 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 1796214 2119131 ~ 2125142 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 2602081 1302034 ~ 1321178 (-)
G141481 NA other upstream 441214 4372247 ~ 4412810 (-)
G141488 NA other upstream 576442 4507475 ~ 4508971 (-)
G141728 NA other upstream 946034 4877067 ~ 4877766 (-)
G141588 NA other upstream 1177302 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1518293 5447424 ~ 5450461 (-)

Expression


Co-expression Network