G141481


Basic Information

Item Value
gene id G141481
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4372247 ~ 4412810 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160765
ATTTGATGGGAAAAAAAAGCAACTTGGGAAGATTGGAATTCACAGAAGAGGCATTTTATAGGCATTGTACTGGCTTAACATAGAAGAGGCAAGAATCAGCAGAAGAAAAGTTTTGTTGCAAAAACTAGTTACAGATATGGAGGGTGCCATTAAAACCGTTGTTATGCAGTACCTGTCTTCAGCACGTGGAAAAGAGAGCCTGGGTGCGAAGAGCTTCCAGAAGTTAGTCCAGGGTCAGCTGGGCAACATCCTGAGTGACACTGACAGTGCTTCAGCAGTGAAGGATATGATGAAAGGACTGGATGACAACCAGGACGGGAAAGTCAGTTTCCAGGAGTACCTGACGCTGGTGGGCTACCTGGCGAACTCACTGAGTGAGCAGAAAACCACAGCCAGTGGACATGAAGAAGCCCCAAAGCACTGATGACAGTTGATTACACTGACACTAATTTGTATTGCTGGAGTATTACAACAGTAATCATGGTAAATAAAGGAGAATGGGGCTGGTTGTCACACTTTTTACTTCATAAATTGTAAAAGTCTGTATACGCACACCAACAAAATATCAAACTGTTCTTTTGGCCAACAGACATTAATAAAATGTGTGAAATTACGATATATATACTGTGATTTAGCCCTTGACTTCCCAGTGTAACAACTAACCCCAATCTCTCACTAATGCAATATAAAATCTGCAATTAAACTAAAATGATATGAAACACTTTTACATTTTAAAAACATTACATTCAAATTATAATACTGTTTACATGTATTCACATTTATGAAATTATGACCTGTGGCCAAGTACAAGTGCTAAATCCCCCCATTCCCCAAAAAGTTTTTTTTTTTTCTCCGTTTGTCTAAATTCCATGTAACAGGTTTTTATTTCAAGACTCATGTGGTTTCATAAAGGATTTAAAGGTAGGGTAGGCAAACCCAAACACTTGGAGCTTCAAGTCCTTGAACTCCAAATTATGCCTTTCTGTGGAAACACTATCAACGCTGAAATGAATCTGCAGCAGTCAGGTGGTACAAGTCAGAGCTCTTAAAATTGTTTATGTTCATTATTATCATAATGTAATGTGCTTTGAGACATGAGGTAATTTAACACTTTGCAGACTCTGCTCTGGCTGTGCGCATTCATGTTGGATTTTATGCTTTCAAAGGTAGCTTGCTATTGCGAACCTCTCAGAAACTGCCTACCCTACCTTTAATTGTTTTTACGCAATGAAATAAGTGCTTTTTATGCTTGATTGGTGCTTGCTTAGATAATAAACAAAGCAAGGCATAAAAATGTAAGCCATGCTACAAATGGATTTATAGATTTACTCTTCAGATTTGTCCATTTGGAAGAACGATGAGGTAAAATAGAACGTTACACTACTGGAGAACTTTTTGTATAACTTTTCAATAAAAATATGGAAATAATGACAAAAAAAAAAAAAAAAAAAT
>TU160760
ATTTGATGGGAAAAAAAAGCAACTTGGGAAGATTGGAATTCACAGAAGAGGCATTTTATAGGCATTGTACTGGCTTAACATAGAAGAGGCAAGAATCAGCAGAAGAAAAGTTTTGTTGCAAAAACTAGTTACAGATATGGAGGGTGCCATTAAAACCGTTGTTATGCAGTACCTGTCTTCAGCACGTGGAAAAGAGAGCCTGGGTGCGAAGAGCTTCCAGAAGTTAGTCCAGGGTCAGCTGGGCAACATCCTGAGTGACACTGACAGTGCTTCAGCAGTGAAGGATATGATGAAAGGACTGGATGACAACCAGGACGGGAAAGTCAGTTTCCAGGAGTACCTGACGCTGGTGGGCTACCTGGCGAACTCACTGAGTGAGCAGAAAACCACAGCCAGTGGACATGAAGAAGCCCCAAAGCACTGATGACAGTTGATTACACTGACACTAATTTGTATTGCTGGAGTATTACAACAGTAATCATGGTAAATAAAGGAGAATGGGGCTGGTTGTCACACTTTTTACTTCATAAATTGTAAAAGTCTGTATACGCACACCAACAAAATATCAAACTGTTCTTTTGGCCAACAGACATTAATAAAATGTGTGAAATTACGATATATATACTGTGATTTAGCCCTTGACTTCCCAGTGTAACAACTAACCCCAATCTCTCACTAATGCAATATAAAATCTGCAATTAAACTAAAATGATATGAAACACTTTTACATTTTAAAAACATTACATTCAAATTATAATACTGTTTACATGTATTCACATTTATGAAATTATGACCTGTGGCCAAGTACAAGTGCTAAATCCCCCCATTCCCCAAAAAGTTTTTTTTTTTTCTCCGTTTGTCTAAATTCCATGTAACAGGTTTTTATTTCAAGACTCATGTGGTTTCATAAAGGATTTAAAGGTAGGGTAGGCAAACCCAAACACTTGGAGCTTCAAGTCCTTGAACTCCAAATTATGCCTTTCTGTGGAAACACTATCAACGCTGAAATGAATCTGCAGCAGTCAGGTGGTACAAGTCAGAGCTCTTAAAATTGTTTATGTTCATTATTATCATAATGTAATGTGCTTTGAGACATGAGGTAATTTAACACTTTGCAGACTCTGCTCTGGCTGTGCGCATTCATGTTGGATTTTATGCTTTCAAAGGTAGCTTGCTATTGCGAACCTCTCAGAAACTGCCTACCCTACCTTTAATTGTTTTTACGCAATGAAATAAGTGCTTTTTATGCTTGATTGGTGCTTGCTTAGATAATAAACAAAGCAAGGCATAAAAATGTAAGCCATGCTACAAATGGATTTATAGATTTACTCTTCAGATTTGTCCATTTGGAAGAACGATGAGGTAAAATAGAACGTTACACTACTGGAGAACTTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160765 False 1452 TUCP 0.37 4 4372247 4412810
TU160760 True 1398 TUCP 0.38 3 4404952 4412810

Neighbor

gene id symbol gene type direction distance location
CI01000027_04324807_04339354 NA coding downstream 32893 4324676 ~ 4339354 (-)
CI01000027_04254645_04264857 NA coding downstream 107390 4254167 ~ 4264857 (-)
CI01000027_04233680_04249553 SCAP coding downstream 122694 4233642 ~ 4249553 (-)
CI01000027_04206424_04209369 NA coding downstream 162867 4205610 ~ 4209445 (-)
CI01000027_04156256_04198063 NEK11 coding downstream 174184 4156256 ~ 4198063 (-)
CI01000027_04419264_04422151 NA coding upstream 5297 4418107 ~ 4422380 (-)
CI01000027_04424958_04434987 NA coding upstream 11499 4424309 ~ 4435229 (-)
CI01000027_04439446_04461699 SHC1 coding upstream 24830 4437640 ~ 4462204 (-)
CI01000027_04464282_04466128 NA coding upstream 50925 4463735 ~ 4466257 (-)
CI01000027_04524446_04527464 NA coding upstream 111001 4523811 ~ 4527464 (-)
G141513 NA non-coding downstream 9012 4362849 ~ 4363235 (-)
G141475 NA non-coding downstream 81766 4290274 ~ 4290481 (-)
G141471 NA non-coding downstream 90112 4281909 ~ 4282135 (-)
G141470 NA non-coding downstream 90418 4281505 ~ 4281829 (-)
G141461 NA non-coding downstream 107525 4263902 ~ 4264722 (-)
G141539 NA non-coding upstream 97449 4510259 ~ 4510623 (-)
CI01000027_04603997_04606475 NA non-coding upstream 157114 4603444 ~ 4608289 (-)
G141572 NA non-coding upstream 204196 4617006 ~ 4619841 (-)
G141490 NA non-coding upstream 217526 4630336 ~ 4637669 (-)
G141679 NA non-coding upstream 295978 4708788 ~ 4708995 (-)
CI01000027_03922380_03931033 NA other downstream 446675 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 583025 3787377 ~ 3790279 (-)
G140118 NA other downstream 787568 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 2144222 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 2246219 2119131 ~ 2125142 (-)
G141488 NA other upstream 94665 4507475 ~ 4508971 (-)
G141728 NA other upstream 464257 4877067 ~ 4877766 (-)
G141588 NA other upstream 695525 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1036516 5447424 ~ 5450461 (-)
G141638 NA other upstream 2375817 6788627 ~ 6796707 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G133108 NA non-coding CM030138.1 CM030138.1 5901703 ~ 5902803 (+)
tiger barb (Puntius tetrazona) si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 misc NC_056714.1 CM032083.1 14899182 ~ 14904907 (-)