RNA id: TU160765



Basic Information


Item Value
RNA id TU160765
length 1452
RNA type TUCP
GC content 0.37
exon number 4
gene id G141481
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4372247 ~ 4412810 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTGATGGGAAAAAAAAGCAACTTGGGAAGATTGGAATTCACAGAAGAGGCATTTTATAGGCATTGTACTGGCTTAACATAGAAGAGGCAAGAATCAGCAGAAGAAAAGTTTTGTTGCAAAAACTAGTTACAGATATGGAGGGTGCCATTAAAACCGTTGTTATGCAGTACCTGTCTTCAGCACGTGGAAAAGAGAGCCTGGGTGCGAAGAGCTTCCAGAAGTTAGTCCAGGGTCAGCTGGGCAACATCCTGAGTGACACTGACAGTGCTTCAGCAGTGAAGGATATGATGAAAGGACTGGATGACAACCAGGACGGGAAAGTCAGTTTCCAGGAGTACCTGACGCTGGTGGGCTACCTGGCGAACTCACTGAGTGAGCAGAAAACCACAGCCAGTGGACATGAAGAAGCCCCAAAGCACTGATGACAGTTGATTACACTGACACTAATTTGTATTGCTGGAGTATTACAACAGTAATCATGGTAAATAAAGGAGAATGGGGCTGGTTGTCACACTTTTTACTTCATAAATTGTAAAAGTCTGTATACGCACACCAACAAAATATCAAACTGTTCTTTTGGCCAACAGACATTAATAAAATGTGTGAAATTACGATATATATACTGTGATTTAGCCCTTGACTTCCCAGTGTAACAACTAACCCCAATCTCTCACTAATGCAATATAAAATCTGCAATTAAACTAAAATGATATGAAACACTTTTACATTTTAAAAACATTACATTCAAATTATAATACTGTTTACATGTATTCACATTTATGAAATTATGACCTGTGGCCAAGTACAAGTGCTAAATCCCCCCATTCCCCAAAAAGTTTTTTTTTTTTCTCCGTTTGTCTAAATTCCATGTAACAGGTTTTTATTTCAAGACTCATGTGGTTTCATAAAGGATTTAAAGGTAGGGTAGGCAAACCCAAACACTTGGAGCTTCAAGTCCTTGAACTCCAAATTATGCCTTTCTGTGGAAACACTATCAACGCTGAAATGAATCTGCAGCAGTCAGGTGGTACAAGTCAGAGCTCTTAAAATTGTTTATGTTCATTATTATCATAATGTAATGTGCTTTGAGACATGAGGTAATTTAACACTTTGCAGACTCTGCTCTGGCTGTGCGCATTCATGTTGGATTTTATGCTTTCAAAGGTAGCTTGCTATTGCGAACCTCTCAGAAACTGCCTACCCTACCTTTAATTGTTTTTACGCAATGAAATAAGTGCTTTTTATGCTTGATTGGTGCTTGCTTAGATAATAAACAAAGCAAGGCATAAAAATGTAAGCCATGCTACAAATGGATTTATAGATTTACTCTTCAGATTTGTCCATTTGGAAGAACGATGAGGTAAAATAGAACGTTACACTACTGGAGAACTTTTTGTATAACTTTTCAATAAAAATATGGAAATAATGACAAAAAAAAAAAAAAAAAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160801 lncRNA downstream 9012 4362849 ~ 4363235 (-) True G141513
TU160754 lncRNA downstream 81766 4290274 ~ 4290481 (-) True G141475
TU160750 lncRNA downstream 90112 4281909 ~ 4282135 (-) True G141471
TU160749 lncRNA downstream 90418 4281505 ~ 4281829 (-) True G141470
TU160740 lncRNA downstream 107525 4263902 ~ 4264722 (-) True G141461
TU160834 lncRNA upstream 97449 4510259 ~ 4510623 (-) True G141539
TU160785 lncRNA upstream 157114 4569924 ~ 4569944 (-) True G141499
TU160867 lncRNA upstream 204196 4617006 ~ 4619841 (-) True G141572
TU160776 lncRNA upstream 217526 4630336 ~ 4637669 (-) True G141490
TU160996 lncRNA upstream 295978 4708788 ~ 4708995 (-) True G141679
CI01000027_04324807_04339354.mRNA mRNA downstream 32893 4324676 ~ 4339354 (-) True CI01000027_04324807_04339354
CI01000027_04254645_04264857.mRNA mRNA downstream 107390 4254167 ~ 4264857 (-) True CI01000027_04254645_04264857
CI01000027_04233680_04249553.mRNA mRNA downstream 122694 4233642 ~ 4249553 (-) True CI01000027_04233680_04249553
CI01000027_04206424_04209369.mRNA mRNA downstream 162867 4205610 ~ 4209380 (-) False CI01000027_04206424_04209369
CI01000027_04156256_04198063.mRNA mRNA downstream 174184 4156256 ~ 4198063 (-) True CI01000027_04156256_04198063
CI01000027_04419264_04422151.mRNA mRNA upstream 5297 4418107 ~ 4422380 (-) True CI01000027_04419264_04422151
CI01000027_04424958_04434987.mRNA mRNA upstream 11499 4424309 ~ 4435229 (-) True CI01000027_04424958_04434987
CI01000027_04439446_04461699.mRNA mRNA upstream 24830 4437640 ~ 4462204 (-) True CI01000027_04439446_04461699
CI01000027_04464282_04466128.mRNA mRNA upstream 50925 4463735 ~ 4466257 (-) True CI01000027_04464282_04466128
CI01000027_04524446_04527464.mRNA mRNA upstream 111001 4523811 ~ 4527464 (-) True CI01000027_04524446_04527464
TU159388 other downstream 446675 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033
TU159398 other downstream 583025 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159241 other downstream 787568 3510282 ~ 3584679 (-) False G140118
TU159249 other downstream 787568 3512060 ~ 3584679 (-) True G140118
TU159244 other downstream 787568 3509352 ~ 3584679 (-) True G140118
TU160774 other upstream 94665 4507475 ~ 4508971 (-) True G141488
TU161047 other upstream 464257 4877067 ~ 4877766 (-) True G141728
TU160890 other upstream 695525 5108335 ~ 5201155 (-) True G141588
TU160937 other upstream 1036516 5449326 ~ 5450363 (-) True CI01000027_05447458_05450346
TU160955 other upstream 2375817 6788627 ~ 6796707 (-) True G141638

Expression Profile