RNA id: CI01000027_04439446_04461699.mRNA


Basic Information

Item Value
RNA id CI01000027_04439446_04461699.mRNA
length 3847
RNA type mRNA
GC content 0.46
exon number 13
gene id CI01000027_04439446_04461699
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4437640 ~ 4462204 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGCGATAGAGCAACGTGGAAAGATATTTAAGGACGTTAAGTGGACACTGAGACGGCTGAGACATCATGGAGCTCGTCCCCAAAACCAAATACACGCCCTTTAGGAGCGACTCCTTCAGCTCAACAGACGAGACGGCGTCCAATCCTTCCCTCCCTTCTTCTGCTCCTCTCACTCCTCTCACCCCTCCTGGCATCCCTCCTTCTCTCTCCTCATCCTCCCTCACCCCCATTCTCCCTCCTTCGTCTCCACGGCAGGCTGAGAACAGCCCCACCACCCTCTGCTCCTTCTTCCCCAAGATGGGAGCCCTGCGGCTGGGCGTGTCTTCCACTCTGCTCCCAGGCCTGAAGGCCTCCAGCAGGCCGGCGAGCATGCCAGGCGGTCAGGGAGGTTTGGGAGAGTCTCCGGAAGACACTAGGACCTCCGCCGCCAGCTCTTCTCTTCCTCCTCCTCTTCCTCTCCTTTCTCTAACAGCCCCATCTCCTCCTCCTCGTCCCCCACAGGATATGAACCGGCTGGGCGGGGCCTCGCGGAGGGCCCGTGTGGAAGGGGGCCAGCTCGGCGGAGATGAGTGGACACGGCACGGCTCCTTCGTCAACAAGCCGACCCGAGGTTGGCTGCACTCGGACAATGTGGTCAGCACCAGTGGGGTCTCTTACACTGTCAGGTATATGGGCTGTGTGGAGGTGCTGCAGTCGATGAGAGCACTGGACTTCAACACGAGAACTCAGGTTACCAGGGAGGCAATATCAGTGGTGTGTGAGGCAGTACCAGGTGCCAAAGGAGCTCAGCGAAGGAGAAAGCCCTCCTCTCGTTGTCTCTCCTCCATCTTAGGGAAGAGTAATCTCCAGTTTGCTGGAATGACAATCAACCTCACCGTGTCGACCAGCAGTCTGAACCTACTGGCAGCCGACTGCAAACAGATTATCGCCAACCATCACATGCAGTCCATCTCTTTTGCATCAGGAGGAGATCCAGACACAGCAGAGTATGTTGCCTACGTCGCCAAAGACCCCGTCAATCAAAGAGCGTGTCATATCCTGGAATGCTCAGAGGGCTTGGCTCAGGAGGTCATCAGCACCATCGGTCAGGCTTTTGAACTGCGCTTTAAACAGTACCTGAAGAATCCCCCCAAACTGGTTACCCCTCATGATCGCATGGCTCCTTTTGATGGGTCAGCCTGGGAGGAAGAGGAAGAGGACATGGCTCCACCCCCTGACGTTCCGTATTACAATAACTTCCCGGGTAAACAGCCTCCCCCTGGAGGCTTGGTTGACATGAGAACCCGTCCTGGACACAGTACAGGAGCCACGCTGCCCTATGGACAGCCCAGCCAGAACGATATTCACAAGCAGCCTCTACCTCCTCTGCCAGTGGGTGTTAAGGAAGGAGGCTTGTTTGATGACCCCTCATACGTCAATGTGGATAAACCCCGCACCCCAGCGGCGGCCGCTGCAGCAGCCAATGGAAATGCTCACAGAGATGCGTTTGACATGAAGCCATTTGATGCTGCTTTAGGCGTGTCGGGAGCAGTGGCGCCCCCTATGGCAGAGCAGCTACAGAACGAGCCCTGGTTCCACGGACCTCTAAGCCGCAGACAGGCCGAAAGACTCCTGACCAAGGATGGAGACTTCCTGGTGCGGGAGTCAGGCACCACACCAGGCCAGTACGTCCTCACTGGACAGCAGGGCGGCCAACCCAAACACCTGCTTCTGGTGGATCCAGAGGGAGTGGTGCGCACCAAAGACCACCGTTTCGAAAGTGTCAGTCACTTGATTAGCTATCACATGGACAACCGGCTGCCAATCATCTCGGCAGGAAGCGAGTCGACCGTGGAGCGTTGGAGAGAGATGCACCCACAGCGCCCGCTGCCCCAGGCCATGCCCTCCTCACTGGGCCAAAACCTGAGAGATGCAGCTATGAGGATGGGCCATGGCAAGGGCATACTGGGAGGAAATGTGGCGTATGGAGTTATCCAGTCTCTTAAAGAGTGCCTCTACTTCCTGCTCTGCTGCTGGTGCATCAAAGAGATCATGGATTGACTGAAAGAAAGGTAAAACAAAGGTTTTACAGGTATGTTGGAGGTAACAAGACTGCTTAATTACTCATCCTCATGTCGTTCTACACCCGTAAGACCTTCGTTCATCTTCGGAACAAAAATTAAGATATTTTTCATAAAATCTGATGGCTCAGTGAGGCCTGCATTGCCAACAAAACAATTAACACTTTCAGTGCCCAGAAAGCTACTAAACACATATTTAAAACAGATCATGTGACTACAGTGGTTCAATCTTAATGTTATGAAGCGACTAGAATACTTTTTTGTGCGCCAAAAACCAAATAACGACTATCCAGTGATGGACGATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACGAATCTTTTGTTTCGAATCAATGGTTCAGAGCGTGTATCAAACTACCAAAGACACGTGATTTGAGGCTTCATTACATCATAAGTGTTTCGAAATTTCAATGGTTCACCATTGGGGGCGTGACTTTGGCAGTTTGATACAGGCTCCGTACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTATTATTTTGTTTTTTTTGGTGCAAAAAAGTATTCTCGTTGCTTCATAACATTAAGGTTGAACCACTTTAGTCACATGAACTGTTTTAAATACGTCTTTAGTAGCTTTCTGGGCATTGAAAGTGTTAATTGTCTTGCTGGCAATGCAGGCCTCACTGAGCCATCAGATTTTATGAAAAATATCTTAATTTGTGTTTCGAAGACGAACGAAGGTCTTACGGGTGTGGAAAGACATGAAAAAATGATTGTGAGCATGTATACCAACGTAGCATATACAATCATTGTTATTTAAGTATACTATTATAGTCTACTATTTATAAAAAAAATTTTGAATTGGCTTTCAGTTCTATATTTTGTTTCAGCTTTATTTCAATTACAGAAAGGGGTTTTTAATAGTTTTTTTTTTTTTATTATTATTTTTTTAACAATAGCAATATTAACAGTGTTGACTGATTTTGATATGTTAAGCTGTATGACTACAAAAAGGAAGTAATTTAAATGTCAGGTTTAAAGGACTATAAGATATTAATGCTAAGCAATATTTAATGTTCATTTATATCGATGATTCAAACATTTATTGAACAAAACGAGGGCTCACAGTCACAGACGTTTGGCCTTGACCTTGTTTAATTGTGTGCAGTCTGCTGATGCTACCTATAGAGGGCGCCCCAGGCAACCCCCAAAATCTAGTGATTATATTATTCTGTAAATATCATGTTACTAAACCAGTATATTAATTGCCAGATCATATTTAAAGCAGATATACAGTGTTATTTATGATGTCTCCTTTTCTTTTTTCAGAGTTTTTGAGCCAGTGGATGTTTCATCACAGATGTGTTGATGCTTTGGCCTGATTTCAGATCTCTTTACACATGCATAAACGCACATGCCTTACAAGCATTAGAGGCTGCTGTATTAATGCAGTTTAAAGCATTATTCAAACATGTTTTAAAAGAGACTGTTTGAGAAAACTGTGCAATAAATAAAAATATATATAAAAAAACCCGAAGAGGTCCTGATGCTTTTTAAATGTTTAAAATGTAGGGTACAAAGTCAAACCATGACTGTGTAAGGTATTAAAAATATATGCAAATACAAATTAAACAAATACAACATGCCATGAATATGCTCATTATAATACATACTCAACATTTTACACAAATGGTTACAAAGGAAGTAGCATATTATATAGGCTCTATCAGAATAAA

Function

GO:

id name namespace
GO:0030971 receptor tyrosine kinase binding molecular_function

KEGG:

id description
K06279 SHC1; SHC-transforming protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160808 lncRNA downstream 41236 4393403 ~ 4396404 (-) True G141519
TU160804 lncRNA downstream 56053 4364046 ~ 4381587 (-) True G141515
TU160801 lncRNA downstream 74405 4362849 ~ 4363235 (-) True G141513
TU160754 lncRNA downstream 147159 4290274 ~ 4290481 (-) True G141475
TU160750 lncRNA downstream 155505 4281909 ~ 4282135 (-) True G141471
TU160834 lncRNA upstream 48055 4510259 ~ 4510623 (-) True G141539
TU160785 lncRNA upstream 107720 4569924 ~ 4569944 (-) True G141499
TU160867 lncRNA upstream 154802 4617006 ~ 4619841 (-) True G141572
TU160776 lncRNA upstream 168132 4630336 ~ 4637669 (-) True G141490
TU160996 lncRNA upstream 246584 4708788 ~ 4708995 (-) True G141679
CI01000027_04424958_04434987.mRNA mRNA downstream 2411 4424309 ~ 4435229 (-) True CI01000027_04424958_04434987
CI01000027_04419264_04422151.mRNA mRNA downstream 15260 4418107 ~ 4422380 (-) True CI01000027_04419264_04422151
CI01000027_04401843_04403095.mRNA mRNA downstream 34545 4401490 ~ 4403095 (-) True CI01000027_04401843_04403095
CI01000027_04324807_04339354.mRNA mRNA downstream 98286 4324676 ~ 4339354 (-) True CI01000027_04324807_04339354
CI01000027_04254645_04264857.mRNA mRNA downstream 172783 4254167 ~ 4264857 (-) True CI01000027_04254645_04264857
CI01000027_04464282_04466128.mRNA mRNA upstream 1531 4463735 ~ 4466257 (-) True CI01000027_04464282_04466128
CI01000027_04524446_04527464.mRNA mRNA upstream 61607 4523811 ~ 4527464 (-) True CI01000027_04524446_04527464
CI01000027_04603997_04606475.mRNA mRNA upstream 141240 4603444 ~ 4607794 (-) False CI01000027_04603997_04606475
CI01000027_04744526_04745444.mRNA mRNA upstream 282154 4744358 ~ 4746698 (-) True CI01000027_04744526_04745444
CI01000027_04750483_04762663.mRNA mRNA upstream 288116 4750320 ~ 4762663 (-) True CI01000027_04750483_04762663
TU160765 other downstream 24830 4372247 ~ 4412810 (-) False G141481
TU160760 other downstream 24830 4404952 ~ 4412810 (-) True G141481
TU159388 other downstream 512068 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033
TU159398 other downstream 648418 3787378 ~ 3789222 (-) True CI01000027_03787377_03788902
TU159244 other downstream 852961 3509352 ~ 3584679 (-) True G140118
TU160774 other upstream 45271 4507475 ~ 4508971 (-) True G141488
TU161047 other upstream 414863 4877067 ~ 4877766 (-) True G141728
TU160890 other upstream 646131 5108335 ~ 5201155 (-) True G141588
TU160937 other upstream 987122 5449326 ~ 5450363 (-) True CI01000027_05447458_05450346
TU160955 other upstream 2326423 6788627 ~ 6796707 (-) True G141638

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020892 False 3920 mRNA 0.46 13 NC_007127.7 22782010 ~ 22863348 (-)
bowfin (Amia calva) AMCG00012513 True 1683 mRNA 0.64 12 CM030138.1 20226398 ~ 20234055 (+)