CI01000027_04750483_04762663 (TRIM46, TRIM46A)


Basic Information

Item Value
gene id CI01000027_04750483_04762663
gene name TRIM46, TRIM46A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4750320 ~ 4762663 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04750483_04762663.mRNA
TCCAATATGAAGAGTATAGAGAGAGAGCTGCACTGTCCCGTGTGTGAGGAGATGGTGAAGCAGCCCATAGTGTTGCCATGTATGCACAGTGTGTGTGTGCTGTGTGCGGCAGAAGTCCTGGTTCAGAGAGGATACCCACCCCCCGAGCTCCCCCCAGAGCCCAACACACCCACCTCAAGCCCCAACACACGCTCGCCCCGACAGACACGCCGACCTCCGCCCAAAACAGACCGCCTAGACCGGGTGATCAGAACAGTGTGTGGGACACATCCAGGACGGAGGCGTAAAGACACCCCTCCTGTGATCATGCTGTTCCCCTGTCCCACCTGCGGAAAAGATGTGGAGCTGGGAGAGAGAGGGCTTGCAGATTGTCTGAGAAACCTCACGCTGGAGCGCATAGTGGAGAGGTACAGGCACACAGTGAGTCTTGGCAGCATGGCAGTCATGTGTCAGTTCTGTAAACCTCCTCAGGCTCTGGAGGCCACCAAAGGCTGCGCTGACTGCAGGTCCAACTTCTGTAACGAGTGCTTCAAACTGTACCACCCCTGGGGCACACCACGAGCCCAACACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTATTAGTTTGTGTGGAACATGAGCAGGAGAGGTTGCAGTTTTACTGCAGGTCTTGTCAGCGTCTGTTGTGTCCACTTTGTAAACTCCGTCGATCCCACAGTGGACACAAGATCATTCCTATTGCGTTGGCTTACCAAACTCTAAAGGAGAAGATCACCAAAGAGATGAACTACGTCTTGGGCAATCAGGATTCTATACAGGCACAGATCACCCAAGTAGAAAGCGGCATTGCTCAGACTGAGGTGAACAGCGCAGTGGCTAAGGAGCAGTTGAATCAGTGTGTGAGTGAATTGCGTGGTGTGCTGGCGGAGCGTCAGGGGGCCTTGGCCATGTTGATGGAGGGGGCTCGTGTCCAGCGGACAGCGGCTCTGAACGCACAGCTCTCAGAAAAACAGAGTCTTTTGGAAAACGCAGGGCTGCTCACATACACTCAGGAGCTTCTAAAGGAAACCGACCAGCCGTGCTTTGTGCAGGCTGCCAGAGTCACGCACAACAGACTGGTAAAAGCAATAGAACATCTTCAGCATTTCTCTCTATCTGCTGATCCCTCATTTCGACACTATCAGATGGACGTTTCCAGAGAGCTCCAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAAAAGACCCTGGCCTATAACGAGCTCTATTTGTGCTGGCGCCTCCCACAGGACTCCGCCCCTGCCTGGCACTACTCAGTGGAGTATCAGAGGAAAGTGGGCGGAGCTGGAGCATTATGGGGCAGAGTATGGTCTGAAGGAAGCTCAGGAAGTAATGGCAGCCACTGTTCTTGGCAGCGTCTGGATGATGTGGGTGGCACCAGTGCAGTGATTGACAAGCTAGAGATGGACAGTGTGTATGTCCTGAGAGTTCGAGGCTGTAATAAGGCAGGGTTTGGAGAGTACAGCGAGGAGGTGTATCTACACACACCTCCTGCACCAGTGTTGTCGTTTTGCCTGGATTCGCGCTGGGGCCTGCATGCGGAGCGGGTAGCGCTGGGGAAAGGGCAGACGTACGCCCGGAGTGTTCCTGGGATGACTCTGTTGCAGGCAGCTGATCGGGCCCTCACCTCATGTCACCTCACCTCTGACCTCCTTGTGGCTGATGTTTCCATCACACAGGGAAGACACTATTGGGCATGCTCAGTGGAGCCTGGATCCTACCTGGTTAAGGTGGGAGTGGGTGTTGAAGCAAAACTGCAGGAGTGGTTCCATCTTCCACAAGACATGGCAAGTCCACGGTACGATCCAGACAGCGGTCATGACAGCGGCGCAGAGGACGCCCAAGACTGCCCCCCTCCATTCTGTTTCCTCACAATGGGCATGGGCAAGATTTTACTACCTAAGTGTGGGGCATCCAACACTTCTACTGGCCCCCTCACTGCCCCCCTTCCACCTCGCCTCGGACTGTGTCTGGACTTTGAGAAGGGTCGGCTCACTTTCTACGACGCACACTCTCTGCGAGTGCTGTGGGAGGGGACTGTCGATTGCTCCGCCCCTGTTTGCCCAGCCTTCTGTTTCATTGGTGGAGGGGCTCTGCAGCTACAGGAGCTAATAGCCAATCGCAGTACAGAGCAGAACCCGCCAAGAAGAGTGACCATCCAAACACGAGCCACCGATGCCGGCCACTGAAACGTCTGATCGCTTTAAAACTAGTCAAATCAGCACCTTTAGGCAAATATTCTTTTATTGTTTTCTATCGACTTTGTTTACAAGCTTATTTCATAGCTAATGATGCATTGATTGATGATATTTTATAATAAGATTAATTTAATTTCAGAGTATACACATTAAA

Function

symbol description
trim46a Predicted to enable zinc ion binding activity. Orthologous to human TRIM46 (tripartite motif containing 46).
trim46 Predicted to enable zinc ion binding activity. Predicted to be involved in negative regulation of axon extension; positive regulation of anterograde dense core granule transport; and regulation of cellular protein localization. Predicted to act upstream of or within several processes, including anterograde synaptic vesicle transport; generation of neurons; and protein localization to axon. Predicted to be located in main axon.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12022 TRIM46; tripartite motif-containing protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04750483_04762663.mRNA True 2425 mRNA 0.53 11 4750320 4762663

Neighbor

gene id symbol gene type direction distance location
CI01000027_04744526_04745444 NA coding downstream 3622 4744358 ~ 4746698 (-)
CI01000027_04603997_04606475 NA coding downstream 142526 4603444 ~ 4608289 (-)
CI01000027_04524446_04527464 NA coding downstream 222856 4523811 ~ 4527464 (-)
CI01000027_04464282_04466128 NA coding downstream 284063 4463735 ~ 4466257 (-)
CI01000027_04439446_04461699 SHC1 coding downstream 288116 4437640 ~ 4462204 (-)
CI01000027_04812648_04813272 NA coding upstream 49959 4812622 ~ 4813877 (-)
CI01000027_04988247_04994680 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L coding upstream 225571 4988234 ~ 4994680 (-)
CI01000027_05037013_05040668 OSGIN2 coding upstream 272524 5035187 ~ 5040668 (-)
CI01000027_05047401_05048081 NA coding upstream 284630 5047293 ~ 5048081 (-)
CI01000027_05110063_05126542 NA coding upstream 347400 5110063 ~ 5126542 (-)
G141679 NA non-coding downstream 41325 4708788 ~ 4708995 (-)
G141490 NA non-coding downstream 112651 4630336 ~ 4637669 (-)
G141572 NA non-coding downstream 130479 4617006 ~ 4619841 (-)
G141539 NA non-coding downstream 239697 4510259 ~ 4510623 (-)
G141601 NA non-coding upstream 11538 4774201 ~ 4777980 (-)
G141695 NA non-coding upstream 23191 4785854 ~ 4795739 (-)
G141650 NA non-coding upstream 110456 4873119 ~ 4873767 (-)
G141727 NA non-coding upstream 112558 4875221 ~ 4875663 (-)
G141730 NA non-coding upstream 118780 4881443 ~ 4881655 (-)
G141488 NA other downstream 241349 4507475 ~ 4508971 (-)
G141481 NA other downstream 337510 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 824748 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 961098 3787377 ~ 3790279 (-)
G140118 NA other downstream 1165641 3509352 ~ 3584679 (-)
G141728 NA other upstream 114404 4877067 ~ 4877766 (-)
G141588 NA other upstream 345672 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 686663 5447424 ~ 5450461 (-)
G141638 NA other upstream 2025964 6788627 ~ 6796707 (-)
G142203 NA other upstream 2378431 7141094 ~ 7143063 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location