CI01000027_05047401_05048081


Basic Information

Item Value
gene id CI01000027_05047401_05048081
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5047293 ~ 5048081 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05047401_05048081.mRNA
GAAACGGGTCTGCAGAAAAATCGCAGAAAAGAAACGACTGAACTAAACATTGTTCCAATGGAACGATTAATTGGATTCATTAACGCCCAGTGGTGGCGCTTTCTGTCAGTGAGTCTGCTGATGCTCGCCACCGCATCATCGTTCTCCGTACCCAATCTCGAGATGCTGAATACTGAGAGGGCAGGAGGCGGCAAGACTCCCGGTCACCTGGGCGAGATAAACCGTGAATGCTGGGACGCATCGTCACTAGCGGTAATACAAGAGCGTAAATCACCCGTTGCCGATACGGTTGCTGGTCTCTGGGACTTCATGACACACTTGAGCGGGTCTAATCAACCCAAACATCAAGGCATGTTCATGGAGCTTGCGCAGGTCTTTTGGGAGCGGTATGTGGACTGTGTGCTCGCACGCGCGCACGGACTGGGCAGAAGGGCCAGTGCTTCTAGGCAAGAGATCATCAAAGTGCTAACTTATCATTCAAAAGGAATGCAAATCTAGTCACTTTGTGTTTAAATTCTCATGTCTGTCAAAATGTAGAGATAGAATGTATTTAATTTTGTGACTCTTGTCTATCAAACGTAAGCTAAATTAGCTTGTAGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05047401_05048081.mRNA True 606 mRNA 0.47 2 5047293 5048081

Neighbor

gene id symbol gene type direction distance location
CI01000027_05037013_05040668 OSGIN2 coding downstream 6625 5035187 ~ 5040668 (-)
CI01000027_04988247_04994680 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L coding downstream 52613 4988234 ~ 4994680 (-)
CI01000027_04812648_04813272 NA coding downstream 233416 4812622 ~ 4813877 (-)
CI01000027_04750483_04762663 TRIM46, TRIM46A coding downstream 284630 4750320 ~ 4762663 (-)
CI01000027_04744526_04745444 NA coding downstream 300595 4744358 ~ 4746698 (-)
CI01000027_05110063_05126542 NA coding upstream 61982 5110063 ~ 5126542 (-)
CI01000027_05196462_05200451 RPS19, RPS19-PS4, RPS19.S, RPS19-PS6, RS19 coding upstream 148368 5196431 ~ 5200451 (-)
CI01000027_05215497_05251776 CADM4 coding upstream 166716 5214797 ~ 5251776 (-)
CI01000027_05262810_05263280 NA coding upstream 214519 5262600 ~ 5264586 (-)
CI01000027_05371407_05382804 NA coding upstream 322530 5370611 ~ 5384627 (-)
G141768 NA non-coding downstream 38088 5006995 ~ 5009205 (-)
G141734 NA non-coding downstream 161106 4885987 ~ 4886187 (-)
G141731 NA non-coding downstream 163392 4883680 ~ 4883901 (-)
G141730 NA non-coding downstream 165638 4881443 ~ 4881655 (-)
G141591 NA non-coding upstream 19005 5067086 ~ 5174582 (-)
G141592 NA non-coding upstream 21355 5069436 ~ 5070830 (-)
G141597 NA non-coding upstream 33482 5081563 ~ 5083276 (-)
G141588 NA non-coding upstream 82101 5108335 ~ 5201155 (-)
G141818 NA non-coding upstream 224005 5272086 ~ 5281144 (-)
G141728 NA other downstream 169527 4877067 ~ 4877766 (-)
G141488 NA other downstream 538322 4507475 ~ 4508971 (-)
G141481 NA other downstream 634483 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 1121721 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 1258071 3787377 ~ 3790279 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 401245 5447424 ~ 5450461 (-)
G141638 NA other upstream 1740546 6788627 ~ 6796707 (-)
G142203 NA other upstream 2093013 7141094 ~ 7143063 (-)
G142209 NA other upstream 2105542 7153623 ~ 7157998 (-)

Expression


Co-expression Network