CI01000027_05215497_05251776 (CADM4)


Basic Information

Item Value
gene id CI01000027_05215497_05251776
gene name CADM4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5214797 ~ 5251776 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05215497_05251776.mRNA
TCTCTCATTATTTTCCTTTTTCTCTCCTCTTCTGCATAGTTCACACTTCTAAGCACAAAGGTAGTTACGTGACGCGGGGTCAGGCTGTGCAGGCTGAGAACGTGACCGTGCTGGAGGGGGGGACGGCCCAGATCTCTTGTCGTCTTCAGAACTACGACGGTTCAATCGTGGTCATCCAGAACCCACGCAGACAGACGCTCTTCTTCAATGGAACACGAGCACTGAAAGACGACCGTTTTCAGATGGTTCTTTTCACACCGCGGCTGGTGCGGATCACGTTGACTAATGTAAGTGTGTCTGATGAGGGCGGCTACTTTTGCCAGCTCTACACCGATGACACACACCACCAGGTGGCGACGCTGTCGGTGGTGGTGCCACCGGAGGTGCCTATCGTGGAGGTGAAGACAGAGGCAGTGGAGGGTGGAGAGGTGGAACTCACATGCTTGTCCCCGCGGAGCAAACCACCAGCCACACTGCGCTGGGTTCGAGACCGCCGAGAGATCGCTGGTGTGATCTCTCAGCAGGAGAACGGCAAGACTGTGAGTGTTTCCAACACTATCCGTATCCCTGTGGAGAGGAAAGATAACGGAGCGGCGCTGAGCTGTGAGGCGTCTCACCCGGCACTCGTGGGGCAGAAACGAGTTCGTCACTACAGCCTGGACGTTCACTTTGCTCCTACGGTGAAAATCATTCCCCCTCAGGGCATCCTCCGAGAGGGAGACTCCCTCAGTCTCACCTGCTCCGTTACCGGCAACCCACTCCAATCACACAACGGCACCTACCTCTGTCAGGCGCATAATAATTACGGCCGTGCAGCTGACCACTACACGCTGCTGGTGTATGGTCTGCCCCTTGTGGCTGTTCAGTATACTGCATCCTTCAGCTGTGTCTGTAGACCTGCAGGATGTGTGATGTATTTTGAAAGAGTGCAAGAAATGAGATCCCCAGAGGTCTACCTCCCTTCTTTCTCTTTTTTCCTCTTTTTTCGCATGAGGAAGATAAGAGGTTTTGAGAGGAGAGGAATGAGAGAAATGATTAGCTGCCCTCCTCTTCCTGAAGAGTCAGAGTGGTCTTGGGATATTGATCTGTGTCTGGTTATTGATCAGTCTGGTACCATGCTGTTAATCCCTGATAGACCCATATGCAGAGAGAGAGAGAGAGTAGCTGCGAGCCAGCAACAGGAACGAGATGGGTCGAGAAAGAGCGATGAGGCTAGTGCCTGTATTAGAGGTGTGGAGGATGGTGAGCAGAGCAGTAAGATTGATGATCTTTGGGATGGAGGGATTGAAGATTACATGTCTGTCACTCCCAACTCTCATCCTACCATCGCTCACCCCATCCTTCCAACCTCCAGCTTAACGAAGGAATACAAAGACCCTGGAGCAGTGGTGGAAACCCACAGTGCCGTTCCGTATGCAGTGATCGGGGGCATCCTAGCTCTGCTGGTCTTCACTGTCATCTGTGTGCTCATCGTCACCATCTGGTGCTCCGTCCGACAGAAAGGTTCATATTTGACTCATGAGGCCAGTGGGTTGGATGAACATGGCGAAGTTCAGGAGGCGTTCCTCAACGGTAATGATGCCAGCCAGGGCAAGAAGGAGTACCTACTGTAGCGCCGCCCTAGTGGAGCTCTTCAGAAACACTGGACCGCTGCAGAGTGCACACCGCAACACACACTGATCCCAAACAGACACACCACCACAACGACAACCAGAGGGAATCACAATCGTGCCATATGAAGATGGAGTGGGAAGGAGAGGACGGAGACGTTAATGGAGCAGGGTGGAGAGGGAGAAAGCTGAGAGGAGAGGATAATTATTATGATTGAAAGAGATCATCACACACACTCTTTCGGTTTTTAGTGGCGTGTACAATAGGAAACTAGCCGTAATCGTAGGTCCAGGAGAGAAAAGTGTCCTTTTAAAACAGGCCGATCCATAACCGGCCAGGACTGCATTGCTGCGGGAAGCTGCAAAGGGCTTATGAGCTATTGAATGTCCCAGTGTGAGCAAATTGAAATCCCTTGCATTTGCCAAAGCATACAGTATGGGCCTCAGAGACTGAGCTGGTAGAGAATAACTCCACCAATGACAATGCTGAGAGCACAGAGCCGTCCTCATAAAGTATTCATCTGCGCTTTTCATCCGGCAACTCCATTATCTGCTCACGTTGGCCAAAACCTGTTGACTAGTGAAGAAAAGTTCCTCTCATTTTGATCCTCTCTCGGTGACTCTCTGTTTTCCGCTCTCCAATGCTCCTTCCTCTCCCTCCTTTATCTCTCCACTATTGTTTGTTAATAATTAAGGGATTAAA

Function

symbol description
cadm4 Acts upstream of or within bulbus arteriosus formation; glial cell development; and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; immature eye; nervous system; and presumptive bulbus arteriosus. Orthologous to human CADM4 (cell adhesion molecule 4).

GO:

id name namespace
GO:0008037 cell recognition biological_process

KEGG:

id description
K06783 CADM4, IGSF4C, TSLL2; cell adhesion molecule 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05215497_05251776.mRNA True 2313 mRNA 0.51 12 5214797 5251776

Neighbor

gene id symbol gene type direction distance location
CI01000027_05196462_05200451 RPS19, RPS19-PS4, RPS19.S, RPS19-PS6, RS19 coding downstream 14346 5196431 ~ 5200451 (-)
CI01000027_05110063_05126542 NA coding downstream 88255 5110063 ~ 5126542 (-)
CI01000027_05047401_05048081 NA coding downstream 166716 5047293 ~ 5048081 (-)
CI01000027_05037013_05040668 OSGIN2 coding downstream 174129 5035187 ~ 5040668 (-)
CI01000027_04988247_04994680 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L coding downstream 220117 4988234 ~ 4994680 (-)
CI01000027_05262810_05263280 NA coding upstream 10824 5262600 ~ 5264586 (-)
CI01000027_05371407_05382804 NA coding upstream 118835 5370611 ~ 5384627 (-)
CI01000027_05386030_05388420 NA coding upstream 134184 5385960 ~ 5389592 (-)
CI01000027_05413809_05434967 FXYD6L coding upstream 162022 5413798 ~ 5436238 (-)
CI01000027_05437708_05440788 NA coding upstream 185836 5437612 ~ 5441871 (-)
G141588 NA non-coding downstream 13642 5108335 ~ 5201155 (-)
G141591 NA non-coding downstream 40215 5067086 ~ 5174582 (-)
G141597 NA non-coding downstream 131521 5081563 ~ 5083276 (-)
G141592 NA non-coding downstream 143967 5069436 ~ 5070830 (-)
G141768 NA non-coding downstream 205592 5006995 ~ 5009205 (-)
G141818 NA non-coding upstream 20310 5272086 ~ 5281144 (-)
G141819 NA non-coding upstream 29515 5281291 ~ 5284550 (-)
G141824 NA non-coding upstream 142176 5393952 ~ 5394358 (-)
G141825 NA non-coding upstream 142711 5394487 ~ 5394714 (-)
G141656 NA non-coding upstream 158936 5410712 ~ 5410951 (-)
G141728 NA other downstream 337031 4877067 ~ 4877766 (-)
G141488 NA other downstream 705826 4507475 ~ 4508971 (-)
G141481 NA other downstream 801987 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 1289225 3922242 ~ 3931033 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 197550 5447424 ~ 5450461 (-)
G141638 NA other upstream 1536851 6788627 ~ 6796707 (-)
G142203 NA other upstream 1889318 7141094 ~ 7143063 (-)
G142209 NA other upstream 1901847 7153623 ~ 7157998 (-)
G142299 NA other upstream 2187402 7439178 ~ 7440191 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location