CI01000027_05371407_05382804


Basic Information

Item Value
gene id CI01000027_05371407_05382804
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5370611 ~ 5384627 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05371407_05382804.mRNA
ATATTTAAAAGCATTTCAACTTGTAGTGTGAGGATTAATATTATGACATCATTAGGACATGTGATGTACCTGCCAGGTGTTGCTTACTGTATATGTGCAGGGACTGATAATACACAAGGCTGCCATTTTCACAGTTGGTCAAAGGTTTGTTGTTAAAGATATACGTACCTCTGTATTATTGCTCAAAATTAAAGTTTGGCAAAACTGTAATGGGAAAAGTATTGTCCATTATTGTTGTGTCAATTTTGTATCTTTAGCATTACACCGTTGGTATGTGAACCCTCCTTATGTGGTGTTGTGAAAGTGGTTGGCCAGTTATAAAGGTCAATGATTGTAACCTCTCAACTCAGAACATCAGACACTTTTCTGACATCTGTCAGTTCAGCTCATGTCTACATGTCCATTGTGTACACAACAAAAATAAATGTTGATGGACCTTATTTGAGGTTGAAATTTGTGAAATTTTATGAAAATATATGAAATTTAACTGTGATAATAGTGATATCAGAAGGGTTTACTGATGTATTCTGTTTTGTTGATTAACTTTTAACTAACATACATCTTTCAGACCAGAACCCTTAAACCATGTCTTGGTATGATGGCTTCATATTGTCAATATGAGACATGAAGCTTTGTCTACAACAAACAAATTGGTTACATATACAGTTCAAAACTAGAATTGTGGTCGCTTGCTCTTCTTGAAGACGTCACCGTTGCTGAGTCACCTACAGTCACCTGAAATTACTGTAAGGTCAATGAACTTTAGACTAGGGAATTTCCATTGTGCTCTAGCTACTGTTAAGACCTCTTCTAATTTCCTAGGCTAATTATTATTTAATAGTCTACAATTTAAGTACATTCTAACCTACATGTTTATTATTATTTCTCTTCCCTCCAGTTCAGAGCCATTTATAGGTAAGAGAAGGTAATATACTCGCCCCAGATCTATTTCACCTCGAGTCGCAACAGTAAACATGAACGTGCAGAGAGTGTGTTTCTTTAAAAATGCATTTTCGCACGTGCAGCATTTTTATTTTAGCATAACATCACCTTTTTCAGTGTTATTTCTAATTTATTCCTGTTATATGTTCTAAGAACTTTGCACTGGGTTGTATTTTACTCGTATTCAAACTCTCAAACGTACGAGTTCAGCTTAATGAAAGGAAAGGTAAAGAGAATCTATGAAACTTTTCATAAAAATTACTCAGCAGTAACTGGCATGTGACCCCGGTAATTGTGACATTAACCTTTAAGACTTAACTTTTAAAAAAAGAATTGAAGGATGTCATAACAAATTCTTACGAAGTATGCTACAATAAACCAAACTTTTTTTTTTTTGTCAGTAACCAAATGAATCGCATTGTCACCTGCCGTAACTTAATCGCATCGTCAAGGCTAATTAGGCCTAATGTGATTTTTATCTCTTTATTATAGATTCACATATCAGACGTTTATCACACAAAACCCTAAAAAAAACTAACCGCCAGCTGCCACTGAGGTGCCTTCACACGCACACACCCTATGAACATAGATTATGCTAGATACAAGTGATGCTCAAGCTTGATTTGCATGAGGAGTTTATGCTTTGAGACCATGGCACAATATAACGTTTGTCTTTTAGTATTTTTGTCATTTTAATATAACAATTATAGAAAAAATGAATGCCAATATTATATTAATGGATCGTATCTTTGTAACAAAAACAAAAGAAACATAAGCACGTTAAGCTCCACCTTTTTCTTCTTCCGCGCTCATAAATTGTGTTTACAAACTTTCATTTTAGCAGAAGCTGTTCTCAAACTAAGAAGTCAAGATCCTTCAAAATGAAAGGCTATATTCTCCTCGCAGTCCTGGCGATCACCTTTCTCCAAAGATCCACTGGTTCTTTGGAGGTAAAAGGTCCATCTGAGCCGATTCTGGAAGGACAGGATGTGACATTGGAGTGTGTGGATACAGAATCTGAGCTAAACATGAGCACAGTGCACTTTCAGAGGTTCTCCAAGTACATGAAGAAGTGGTATCGGCTAGAGCCAGATCAGGAGTATTTCTACCGCCGGTGTTTTCTGTATGATGTGGATGTGAGAAGGGAGGAGAACAGACTGCTCCTCTTCATCGCCAGCATCCAGTCCTGGTCTGAGGGTCCATACCGCTGTGTCTCTGAGAATAGTTCAGCACCAGACAACTCTTCCCAGCCCCTCACCATCCCCATCCACTATATGCGGGAGGTGGCCGTGCACAGGGCTGGTTTAGGATACTTAACACGTTATTTCAACTCGGTGCAGGACCTCAAAGTGCGATTAGGCGATGATGTGGAGCTGGAATGTTCTACTTCAGCTTCCGAGGCACCGGAGTACTTCTGGGCTAAAGAGGGAGAGGACTGGATTTTGCCCTCCAAAAAGCTGAAGTTGGAGAAGATGAGGGATCAGGATGGAGGGAGATACACCTGTTCTGCTCAGTCGCCCACTGTGAGGTCCCTCATGAAGAAACGTACAATCAGCATCAGTGTTCTACCAGAGGATGCAGCATGGTATGAGACAACCACCGGTCGTATTTTTTTCATGGTAGGTGGTGTTGGATTTGTCCTTCTGGTGGTTATGATATCCATGATCACTTACCTCTGCCGTCGAGCCAATCAGAGGAAGAGCAAGGGACCCATTGATGACCGTTCCCAGAAGAAACCCATCTACAGATCCAGCGTGGAGTCCCTGCCCTCCACCGCTGGTGACAAGCAGCCGCTGGTGTAAAGAGTGAGATTGATGGAGGACTGGAGAGGAGAGGAGAGAAAAGAAGACAAGAGAAAAAGATTAGGGAGTATTGGGTATTCAGAGTAGAAGGGAGTTAATGAGAGCTTTGCCCATAGATTTTGTTTTGCTCTTGGGTCTTTATTCAGATATATAATTTGGGGACTGTCTATGCGGAAAATCGAAAAAGTATACAAAGACAGGACAAATTATGGTTTTACTGTGAGTCCTTTCCAGTGTGGATGGCAGCAATGCTCTTCAACAAAAGGTGTGCAATTTTCTCTGTATTGATTCAACAACCCTGAAAAATTGAGAAATGCTGAAAAGATGTTTTTGTGAGGTGACATTGAACACTTCTTTCTTTCCACCAGTCTTGCAATGGCTTATTTCTTCAAACTGATTAACATTTCTTTTTAGGAAAACCACTGTCTGCAAGCTGTACAATCATTTAGTCAGATGTAGAAATGTTGGGGGTATTGCTTTTCATAAGTATATAATGTTCTCCTTCACTTGAAAGGACAGTAGATAAGATCCAGATTAACACTGAACCAATTACTCTAGAAGCACTTTGAAACTGTTGCACTTTTTTTTACACAAGTTTGATTTTTCCATATCTTTGAGTTTTAAAGCTATTAAAATTACTTTACAACATAATCACCCTCCAGTGTTGTTACTGATCTAATTAAGATAGACATTCATGTATGCTCAACTTTGCCAAGAAATCTCAAGAGAGTTCATCACTATATAAATGGCATTGCCACTGTTTATTTCCATCTCAAACTTCTGAAGTATTAATAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05371407_05382804.mRNA True 3540 mRNA 0.39 7 5370611 5384627

Neighbor

gene id symbol gene type direction distance location
CI01000027_05262810_05263280 NA coding downstream 106025 5262600 ~ 5264586 (-)
CI01000027_05215497_05251776 CADM4 coding downstream 118835 5214797 ~ 5251776 (-)
CI01000027_05196462_05200451 RPS19, RPS19-PS4, RPS19.S, RPS19-PS6, RS19 coding downstream 170160 5196431 ~ 5200451 (-)
CI01000027_05110063_05126542 NA coding downstream 244069 5110063 ~ 5126542 (-)
CI01000027_05047401_05048081 NA coding downstream 322530 5047293 ~ 5048081 (-)
CI01000027_05386030_05388420 NA coding upstream 1333 5385960 ~ 5389592 (-)
CI01000027_05413809_05434967 FXYD6L coding upstream 29171 5413798 ~ 5436238 (-)
CI01000027_05437708_05440788 NA coding upstream 52985 5437612 ~ 5441871 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 coding upstream 62797 5447424 ~ 5450461 (-)
CI01000027_05451531_05453277 NA coding upstream 66800 5451427 ~ 5453277 (-)
G141819 NA non-coding downstream 86061 5281291 ~ 5284550 (-)
G141818 NA non-coding downstream 89467 5272086 ~ 5281144 (-)
G141588 NA non-coding downstream 169456 5108335 ~ 5201155 (-)
G141591 NA non-coding downstream 196029 5067086 ~ 5174582 (-)
G141597 NA non-coding downstream 287335 5081563 ~ 5083276 (-)
G141824 NA non-coding upstream 9325 5393952 ~ 5394358 (-)
G141825 NA non-coding upstream 9860 5394487 ~ 5394714 (-)
G141656 NA non-coding upstream 26085 5410712 ~ 5410951 (-)
G141834 NA non-coding upstream 90311 5474938 ~ 5475149 (-)
G141728 NA other downstream 492845 4877067 ~ 4877766 (-)
G141488 NA other downstream 861640 4507475 ~ 4508971 (-)
G141481 NA other downstream 957801 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 1445039 3922242 ~ 3931033 (-)
G141638 NA other upstream 1404000 6788627 ~ 6796707 (-)
G142203 NA other upstream 1756467 7141094 ~ 7143063 (-)
G142209 NA other upstream 1768996 7153623 ~ 7157998 (-)
G142299 NA other upstream 2054551 7439178 ~ 7440191 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010691 si:ch211-79k12.1 coding NC_007127.7 CM002900.2 24522824 ~ 24550029 (-)