CI01000027_05413809_05434967 (FXYD6L)


Basic Information

Item Value
gene id CI01000027_05413809_05434967
gene name FXYD6L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5413798 ~ 5436238 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05413809_05434967.mRNA
AAATGCAGTAGCTTTAAAAGGATGTTACTGTAAAAGATGGTGAGAACACTGTACTCTTCTTTAGTCAAAAGGAGAGACATGCATGACACAGTACAGTTATACTCCCTATAGAAAGGAGTTTCAAGCATTCTCTTTATTTTGTGTAAGCCCCTGGGTATTGTGCAAAAACACTATCTCTGGAATTTGTGGAATTTTTGGGAGAGGCTCGTAAACAGCCAAGACAATCATTATCTTTATTTGTCTCCCATGTAGGCTTCAGACAACTAGGCCTACTGCTCAAGATCTAGGCCTTCAGCACACAATATGTATGGGATTTGTATGGATGTTTGATTGTTAATGTATGGAATACGTTAACAACCAAACTAAAACGCGCGTGTGACCCTGGACCACAAAACCAATCATAAGTAGCACCTACTTATGTAGGTATATTTGTAGCAATAGCCAACAATACATTGTATGGGTCAGAATTATCGATTTTTCTTTTATGCCAAAAATCATTAGGATACCGAGTAAAGATCATGTTCCATGAAGATATTGTTAATATTCTAATGTAAACATGTGAAATTTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTCATTTAGACAACTTTAAAGGTGATTTCTTTCTCTCTCTCTCTCTCTCTCTCTCATATATATATATATATATATATATATATATAATTTTTTTTTTTTTTTTTTGCACCCTCAGATTCCAGATTTTGAAATAGTTGTAATAGACACTATCCTGTTTGAAATAGTTGTAATAGACACTATCCTAACAAAACCATACATCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATAGTTGTAATAGACACTATCCTAACAAAACCATACATCATTGGAAAGCTTATTTATTCAAAAAAAAAATTGACCCTTATGACTGGTTTTCTGGTCCAGGGTCACATATTCTTTCCATTTGTTTCTCGCTGATATACCTGATGAATTTTGAGTTAATTACTTAATGCAATTTATTATAGTGCAAAAAAACAGAAAGCACAAGCTTTTGTGTCAGGATATGTTGTAATGCTAAACGGTAGAATGGAGTATGTTACGACCTGCCGGGACCTGATGTGAGATCCACCAATCAGAGAGGTTCTCAAATCTGAATCGGTGTGGTTTTTTTTTTTTTTTTCTTGCAACAATGCAGTGCAGCTGCACAAGCCAAAAGCAGAGCAGGGCTGACTGGCTGGGATTCAAGACAGCCCAGTGTCTCACACTCGCTTGTTTTTCAGACAAGATGGAACTTTGTGTTGCTGCAGTGTTTTTGTCCTACTTCGCTCCAGCTCTGGGATCAGCTTTTGGCAGGGAAATGCCAGCTTCCAACATGGATGAAATTCACGAGTACGACAAGCCATTTCATTATGATTATGAATCTCTGAGGATCGGTGGTATGATCTTTGCTGTGATTCTCTTCTTGATGGGGATCTTCCTCATTGTCAGTCGGAAATGCCGCTGCAAAGGGAAGAAGTCAAAGCCAGTGGGACTTGACACTGAAGCAGCAAGAGGGCATCACATTGCTGCTAAAGTCCATATTAAGCCTATTATCGGTGTTTCTGTTGTTTCAGCGCAGTTAAAAATATTTAAATGTATTTACAGAGTCATACGTGAATTTGGACCAGAGTGCCTTTCAATATGGATCATCAAGAGTGGCATTCACCTGACAATGATTGCAGTCAATCCCATTTTACTTCAATCAGTAAAAAGTGCAAATGCTCGAAATCCAAGTAAGCGTTTTTCACACAAATGTGCAGCCTTGACTGTGCATGTGGAATGAGACCGAATAAA

Function

symbol description
fxyd6l Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of sodium ion transmembrane transporter activity. Predicted to act upstream of or within ion transport and regulation of ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in otic vesicle. Orthologous to human FXYD1 (FXYD domain containing ion transport regulator 1).

GO:

id name namespace
GO:0006811 ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05413809_05434967.mRNA False 1915 mRNA 0.35 11 5413798 5436238

Neighbor

gene id symbol gene type direction distance location
CI01000027_05386030_05388420 NA coding downstream 24206 5385960 ~ 5389592 (-)
CI01000027_05371407_05382804 NA coding downstream 29171 5370611 ~ 5384627 (-)
CI01000027_05262810_05263280 NA coding downstream 149212 5262600 ~ 5264586 (-)
CI01000027_05215497_05251776 CADM4 coding downstream 162022 5214797 ~ 5251776 (-)
CI01000027_05196462_05200451 RPS19, RPS19-PS4, RPS19.S, RPS19-PS6, RS19 coding downstream 213347 5196431 ~ 5200451 (-)
CI01000027_05437708_05440788 NA coding upstream 1374 5437612 ~ 5441871 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 coding upstream 11186 5447424 ~ 5450461 (-)
CI01000027_05451531_05453277 NA coding upstream 15189 5451427 ~ 5453277 (-)
CI01000027_05475732_05478408 NA coding upstream 39436 5475674 ~ 5478629 (-)
CI01000027_05480283_05480708 NA coding upstream 43547 5479785 ~ 5480708 (-)
G141656 NA non-coding downstream 2847 5410712 ~ 5410951 (-)
G141825 NA non-coding downstream 19084 5394487 ~ 5394714 (-)
G141824 NA non-coding downstream 19440 5393952 ~ 5394358 (-)
G141819 NA non-coding downstream 129248 5281291 ~ 5284550 (-)
G141818 NA non-coding downstream 132654 5272086 ~ 5281144 (-)
G141834 NA non-coding upstream 38700 5474938 ~ 5475149 (-)
G141844 NA non-coding upstream 105190 5541428 ~ 5542004 (-)
G141851 NA non-coding upstream 117896 5554134 ~ 5554522 (-)
G141852 NA non-coding upstream 119969 5556207 ~ 5556474 (-)
G141853 NA non-coding upstream 120645 5556883 ~ 5557191 (-)
G141588 NA other downstream 212643 5108335 ~ 5201155 (-)
G141728 NA other downstream 536032 4877067 ~ 4877766 (-)
G141488 NA other downstream 904827 4507475 ~ 4508971 (-)
G141481 NA other downstream 1000988 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 1488226 3922242 ~ 3931033 (-)
G141638 NA other upstream 1352389 6788627 ~ 6796707 (-)
G142203 NA other upstream 1704856 7141094 ~ 7143063 (-)
G142209 NA other upstream 1717385 7153623 ~ 7157998 (-)
G142299 NA other upstream 2002940 7439178 ~ 7440191 (-)

Expression


Co-expression Network