CI01000027_05475732_05478408


Basic Information

Item Value
gene id CI01000027_05475732_05478408
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5475674 ~ 5478629 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05475732_05478408.mRNA
ACACACATACTATATACATTATCATACCAGTATCTATCAATAAACCAACAAGTTTCAAGACTTCAGATTCACTGTAGGAACTTTAGCTGGAAAAAAATAGTTGTATGACCCGTTGGCAACACTTTTTTTGAGGTACAGTATCAGTTTCAGCATGTTTCATGTTTCTGAGAGATGTAGTCTCCTGTCCCTCCCTTCTCATCTCAGTCTGAGCTCAAATCAAAATGGCACTGTCTGTCCTCTGTATTCTCATGAGTACACTTTTCTACAAAGTAAATTGCCTAACCTGCTATCAGTGCATTCCTGAGACATCAACTAAATGCACTGAAACTAAAGTGGAGTGTCCTGTGGGTCAGTGTGGGACCATGAAAACCACATCTTACACAGGAAACAACAAATTGGCTGACATAGTTATGAAGAACTGCTCTGTAGCTCGACAATGCGGGACTGCCTCTGTAAACTTTGGAATTACACAAATAGTCATAAACAATCAGTGCTGCGGCACTAACCTGTGCAATAATAACCAAAGCGAACCAGAACCACCCAAAAGTATCCCAAATGGAATGGATTGCTACACCTGCAATGGAGAAGACTGCTCATCAACTTTACCCTGTGCTAACGATGAAGATCATTGCATCAAGGCAACAGTCAGTACTGATGGACAGACGCTGATAATGAAAGGATGTGCAACCATAAGTTTCTGTAGGGGTGACCTGTCCACCCAGATCGGCCAGTCCAGTACATCAATGGTGGACCTGAACTGCTGTGAAGGACATCTCTGTAACAGCGCTCAAACCGTCACTCCGAGCCGCTGGTTTCAGCTGGGGCTTCTGATGTATGCCATCATACAGACATCATTTTGAGCTTTCAGTTGTGTCATGATGCTCTTTGAGGCTTTAATTCTACTAATAGATAAATAAA

Function

NR:

description
prostate stem cell antigen precursor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05475732_05478408.mRNA True 918 mRNA 0.42 5 5475674 5478629

Neighbor

gene id symbol gene type direction distance location
CI01000027_05451531_05453277 NA coding downstream 22397 5451427 ~ 5453277 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 coding downstream 25213 5447424 ~ 5450461 (-)
CI01000027_05437708_05440788 NA coding downstream 33803 5437612 ~ 5441871 (-)
CI01000027_05413809_05434967 FXYD6L coding downstream 39436 5413798 ~ 5436238 (-)
CI01000027_05386030_05388420 NA coding downstream 86082 5385960 ~ 5389592 (-)
CI01000027_05480283_05480708 NA coding upstream 1156 5479785 ~ 5480708 (-)
CI01000027_05503261_05508595 KCNN4 coding upstream 24632 5503261 ~ 5508595 (-)
CI01000027_05511147_05514288 NA coding upstream 32089 5510718 ~ 5514288 (-)
CI01000027_05524743_05528514 NA coding upstream 45726 5524355 ~ 5528514 (-)
CI01000027_05535896_05537998 NA coding upstream 57226 5535855 ~ 5539126 (-)
G141834 NA non-coding downstream 525 5474938 ~ 5475149 (-)
G141656 NA non-coding downstream 64723 5410712 ~ 5410951 (-)
G141825 NA non-coding downstream 80960 5394487 ~ 5394714 (-)
G141824 NA non-coding downstream 81316 5393952 ~ 5394358 (-)
G141844 NA non-coding upstream 62799 5541428 ~ 5542004 (-)
G141851 NA non-coding upstream 75505 5554134 ~ 5554522 (-)
G141852 NA non-coding upstream 77578 5556207 ~ 5556474 (-)
G141853 NA non-coding upstream 78254 5556883 ~ 5557191 (-)
G141854 NA non-coding upstream 79021 5557650 ~ 5558229 (-)
G141588 NA other downstream 274519 5108335 ~ 5201155 (-)
G141728 NA other downstream 597908 4877067 ~ 4877766 (-)
G141488 NA other downstream 966703 4507475 ~ 4508971 (-)
G141481 NA other downstream 1062864 4372247 ~ 4412810 (-)
G141638 NA other upstream 1309998 6788627 ~ 6796707 (-)
G142203 NA other upstream 1662465 7141094 ~ 7143063 (-)
G142209 NA other upstream 1674994 7153623 ~ 7157998 (-)
G142299 NA other upstream 1960549 7439178 ~ 7440191 (-)
G143267 NA other upstream 2190700 7669329 ~ 7673769 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location