G141592


Basic Information

Item Value
gene id G141592
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5069436 ~ 5070830 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU160907
CACAAAATTGTAAACTATTTTACAGATTACACAAATGACAAGCAGATCATCACAGTTTGAAGTTGTTTAGAACTGTAACAAACGCGCCATTCGGCACAACAGGGTGGAGGTGATATCACATATCACAAAGTAATTGCAGGGTTGCAGAGATGAAGGGTATAAGGTCATCGGTCTTTATTTTAATTGAAGGTTTCAGAAACCCAAACCCTGCTTCATCTTCTCATACTGCTCACTAAACCAGCTCCTGCTTGGTTTTAACAGCAAACTCGCTCTTATCAATCTGTTCAAATGTGGCCTTGGTCTTCTCTGTCAGGTCATCTGCAATCTCCTTCACCTGAGTCTGGAATTTGGCGAAACGCTGCTCCAGTGTGGGCTCATCTTGGGCCTCTGTTTAGATGTCAGGTAAACGTTGTAAATGCATACATCTCATTTGTACTGATGTGAAATAGCATTAAATATACCAATTTATCTTGAGAATAAAATAACAGTTTGTATATCTAAGTAGATGGATCAGATGGACTATTTTACCTGTCTGTACTGCAAGTACAAGCATCAGCACGGCTGCAGCCAGGTACAATTTCATCTTTTCAGTCTTTCCTGTAACACACAGAAAATAAAACGAGTTTATAGAGCCAACGATTACAGACAGTGGTCATTTCAACCGATTTTTTTTTTTCGTTTGCTATTAGGAACTGTTTAAAATGTTTTAAGCGAAATATATTTTATAACATAAGGTATTTATTTATGTTATAATGTTAAGAACCGTCTGCTTCGACGAGAAGAGTTAAATTAGCCTAAATGATCATTTATGTGCTGAAGACACGAAGACGTTCGCTTTTGGAAACTAAAGCAATAGTGATACAAATAAAGATAACAATACTAAATAAATAATAAAAAAAATATATATATATATATAAATATATTATGTTTCTTACGCTTATTCTGATGCTTGTTTTCCATCATTTCTAAGCACTGTAATACTGTTTTTAATTAACTAGGAGCCGATGATGGCACGCAATGACGCCTAGATGTCGCCAATATACTGTTTATTTACTTACTGAACGTAAGAAAAGAACGTCTATTGCTTGACTGAAAAGCTCGCTGGATTCGCTTTTTATTTCTGTTTAAAAGTTTGGAAAGTTATCACGACAAGAATAAGTTTAATGTAAGTTGTCATACCTTCCTTGCAGTCCTCGAGAGA
>TU160909
CACAAAATTGTAAACTATTTTACAGATTACACAAATGACAAGCAGATCATCACAGTTTGAAGTTGTTTAGAACTGTAACAAACGCGCCATTCGGCACAACAGGGTGGAGGTGATATCACATATCACAAAGTAATTGCAGGGTTGCAGAGATGAAGGGTATAAGGTCATCGGTCTTTATTTTAATTGAAGGTTTCAGAAACCCAAACCCTGCTTCATCTTCTCATACTGCTCACTAAACCAGCTCTGGTTTTAACAGCAAACTCGCTCTTATCAATCTGTTCAAATGTGGCCTTGGTCTTCTCTGTCAGGTCATCTGCAATCTCCTTCACCTGAGTCTGGAATTTGGCGAAACGCTGCTCCAGTGTGGGCTCATCTTGGGCCTCTGTTTAGATGTCAGGTAAACGTTGTAAATGCATACATCTCATTTGTACTGATGTGAAATAGCATTAAATATACCAATTTATCTTGAGAATAAAATAACAGTTTGTATATCTAAGTAGATGGATCAGATGGACTATTTTACCTGTCTGTACTGCAAGTACAAGCATCAGCACGGCTGCAGCCAGGTACAATTTCATCTTTTCAGTCTTTCCTGTAACACACAGAAAATAAAACGAGTTTATAGAGCCAACGATTACAGACAGTGGTCATTTCAACCGATTTTTTTTTTTCGTTTGCTATTAGGAACTGTTTAAAATGTTTTAAGCGAAATATATTTTATAACATAAGGTATTTATTTATGTTATAATGTTAAGAACCGTCTGCTTCGACGAGAAGAGTTAAATTAGCCTAAATGATCATTTATGTGCTGAAGACACGAAGACGTTCGCTTTTGGAAACTAAAGCAATAGTGATACAAATAAAGATAACAATACTAAATAAATAATAAAAAAAATATATATATATATATAAATATATTATGTTTCTTACGCTTATTCTGATGCTTGTTTTCCATCATTTCTAAGCACTGTAATACTGTTTTTAATTAACTAGGAGCCGATGATGGCACGCAATGACGCCTAGATGTCGCCAATATACTGTTTATTTACTTACTGAACGTAAGAAAAGAACGTCTATTGCTTGACTGAAAAGCTCGCTGGATTCGCTTTTTATTTCTGTTTAAAAGTTTGGAAAGTTATCACGACAAGAATAAGTTTAATGTAAGTTGTCATACCTTCCTTGCAGTCCTCGAGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU160907 False 1201 lncRNA 0.36 2 5069436 5070830
TU160909 True 1196 lncRNA 0.35 2 5069436 5070830

Neighbor

gene id symbol gene type direction distance location
CI01000027_05047401_05048081 NA coding downstream 21355 5047293 ~ 5048081 (-)
CI01000027_05037013_05040668 OSGIN2 coding downstream 28768 5035187 ~ 5040668 (-)
CI01000027_04988247_04994680 RPS27.1, RPS27, RPS27.2, RPS27.L, RPS27L coding downstream 74756 4988234 ~ 4994680 (-)
CI01000027_04812648_04813272 NA coding downstream 255559 4812622 ~ 4813877 (-)
CI01000027_04750483_04762663 TRIM46, TRIM46A coding downstream 306773 4750320 ~ 4762663 (-)
CI01000027_05110063_05126542 NA coding upstream 39233 5110063 ~ 5126542 (-)
CI01000027_05196462_05200451 RPS19, RPS19-PS4, RPS19.S, RPS19-PS6, RS19 coding upstream 125619 5196431 ~ 5200451 (-)
CI01000027_05215497_05251776 CADM4 coding upstream 143967 5214797 ~ 5251776 (-)
CI01000027_05262810_05263280 NA coding upstream 191770 5262600 ~ 5264586 (-)
CI01000027_05371407_05382804 NA coding upstream 299781 5370611 ~ 5384627 (-)
G141768 NA non-coding downstream 60231 5006995 ~ 5009205 (-)
G141734 NA non-coding downstream 183249 4885987 ~ 4886187 (-)
G141731 NA non-coding downstream 185535 4883680 ~ 4883901 (-)
G141730 NA non-coding downstream 187781 4881443 ~ 4881655 (-)
G141597 NA non-coding upstream 10733 5081563 ~ 5083276 (-)
G141588 NA non-coding upstream 59352 5108335 ~ 5201155 (-)
G141818 NA non-coding upstream 201256 5272086 ~ 5281144 (-)
G141819 NA non-coding upstream 210461 5281291 ~ 5284550 (-)
G141824 NA non-coding upstream 323122 5393952 ~ 5394358 (-)
G141728 NA other downstream 191670 4877067 ~ 4877766 (-)
G141488 NA other downstream 560465 4507475 ~ 4508971 (-)
G141481 NA other downstream 656626 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 1143864 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 1280214 3787377 ~ 3790279 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 378496 5447424 ~ 5450461 (-)
G141638 NA other upstream 1717797 6788627 ~ 6796707 (-)
G142203 NA other upstream 2070264 7141094 ~ 7143063 (-)
G142209 NA other upstream 2082793 7153623 ~ 7157998 (-)

Expression


Co-expression Network