CI01000027_04419264_04422151


Basic Information

Item Value
gene id CI01000027_04419264_04422151
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4418107 ~ 4422380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04419264_04422151.mRNA
AAACTGGTGGTTCAGTGAGAAAACAATTACACATCAAAGAGGCGGAGCTTGAAATGAGTGTTTTTTTGTTTTGTTTAAAAAAGAGAACTTGTTTTTTTCACAGTAAAAGAGGAAGTGAGGGAAATAATAGTTGATGCAGGGTCTGAACAAGTGCAGTGTGAGGGTAAATGCGAATGAAAACTCTGCAGAGTCAAGGCATAGGAACAGATTTGTTTAAAGTTCCTTCAAAATGGGTGTGACTGACTCAGATTGCTCGAGCTTCTGGTGGAGATTTGCACTGGGTTTAAGTATCTGCAATGTTGTTTTTACTTTTATAACTAAACGCTGCATAACCACTGAGGAGCATCTCATCAGAGACATGCCCAAGACTCCACACTGCAACCATCTTCCAGGAAGGGGTCCATACACAGACTGCAATATTATAGACCTTCGCACTGATCTGTCAGAGGTAGGTCATGAGGTTAGATCCCTCTGCATCATCAGCGATATAACAAGCATTCCTGCCAATGCCTTTTCACACTTACCTTCTTTGGAAGTCCTTCAAATAGATGGTATAAGCCTTGCGAGGGTTCAGTCTGGTGCATTTTCAGGACTCCCCAATCTGAAGTATCTCTGGCTGCATTTCAGTGATAACATTTGCAGATCCGTTGCCATGGAAAGTCTTGCATTTGCTGGTTTGACTAATTTAGAGGATTTGACACTGATAGGTCTGAAGTTATCCAACGTATCCAGCAGTATATTTGATCCGTTGGTTAGTGTAATCAAACTAGACATTACCAGAACTTGTGCAATGGACCTTAGTGATATTTTCTGTTATCTTCCGGATGGAATGTCCCATCTGAAGGACCTGAATGTTAGAGAAAGTGGGATTTCAACGATTGAGACCAAAGAATGTCCAGGGGGATCAAAGACCTGGCCTCTGACTGTTCTTTCTGGGATTCGAAACCTTTATCTAATAGGGAACAGTATCGAAATTATCCAAGCAAACTCATTAGTTGTGTTCCAGAACCTCTCCAGCTTTTTTCTGGAGTTCAAAGGCGAGTCTCTGGACAGTATTTGGGAGTCTGGGATTGGAAAAGTCAGTGAGTTGTGTTTGTCAGGGACATCAGTAGAAAAATACTCAACAAACTTCAAAGATTTGTGTCATCTTGCCTCCAACCTTCATCTTCAATCCCTCAGCCTCATTTATACATCAACAGACAGATTGTCTGCAGAGGACTTAAAGGATTGTGGGACAACATTGACAAAGTTATTCATGAGCAGTTCGGAAGTAGACCAACTGGACTTTAGTTTCTGGACAGGAAACGCAGGTATGCAAACACTGCGAATGCCCTATATGAAGTTGAAAGAAGCACCATTCTGTGTTGGTGTGAATGGGACTGTGTGGTCCTTAACCTCACTAGACCTCACCGGAAACTCAATTAAAGAAATTGACGGAGACCAGTTTGCTTGTATGCCTTTTCTCGAGCAACTCTTTCTCAGTAAAAATACCATAAAAACCCTACAGCTGAATGCATTTCGTGGTTTGCATCACCTTAAAATTCTCAAGCTTGATTCGAACAAAATTTCACAGCTTACTGCAAAGGATTTCAGATCTCTTCAGGCTTTGGAAATCCTGCTTATCGATGATAACGTCATTGAGTCTATTGAGGACGGAACATTTCGGGACCAGCGGGAGCTTCGTGAACTGTCATTTGGTAGATTGGAGTATGTTTATACATTGCATCTAAATATGATTTTTCATGGGTTTCCACCGAAAATACAACGACTAAGAATCGATGCACATTATGGAACAACTTTTTACATGGGAAGTACACCACAGCCCAAGGGAACATTTCTTCTGGAGTTAAATGGAGACAGGCTGGATTTTGTGGACTGTAAAACTTCTGTTTTCAAGGCAGTTCAAGAGCTGAAAGTGAATTGCACCTTTTTCATATGCAAGAACGAGTTCATGGCACCTTATTTCCCAAACGTGGAATCTTTTGAGATCTCAGGAGAAGCTGAAGGAGCACATCTCAGTTACACTAAAATCAATACACTGCACCGTCTCAAGCGTCTCAAGCTCATCAACCTGAACTTTTTCAATTATACAGAAACTGGAAGTGTCTTCAGGAACCTAACACAACTCCAAACCCTAGTGCTGGTAAACTGCCATCTCAGCTTCCTGACTGAGAGTATGGTTAAAGATCTGACATCTCTGCAACTGTTGCGTCTCTACAGCGACCATCCTCTGATCTTGATTGACGGTGTGTTTGAAGTTTTGCCAGCACTAACAGCATTTGTTCTTGACCGAGTGGATTTTCAGTGCAGTTGTGTTAGTGGCTGGATCCTTGATTGGGCAGAGAGCACGGAAAAAGTCCAGGTTATCTACTTGCAGAAGCAGAAGTGTGTCTGGCACTATAAGAAACTCAATTTCTTGGCTACCATGGAGAAGCTATGTCAGACTGACGCACAGTACATTTGTTATGTAGCCACAGCTGGCAGCATTTGTCTTCTGCTGTCGGCAGCCGTTGGATATCGTTTTGCTCGCTGGCCTTGCGTAGTCCTCTTCTTCCGCCAGAAAGGATGGGTGGAGAGGAGGTTTGGCAGGCAGTGGCATAAGAGGAGGAGAAGACTCCAGGAGATCGAGGAGATGCAGTACGATGCCTTTGTGTCTTTCTGTAGCCGAGACGAAGCCTGGGTTCTGGGGGAGATGGCTCCTCGGCTGGAGGAACAAGGGAACCCGAGATTGAGGCTCTGTTTGCACAACAGAGACTTTGAGGTGGGAAAAGATATCATGGACAACATCAGCGAGAGTATCTACAGCAGTCAGTGTACAGTGTGTTTGATCAGCCGCCGCTATCTGCGTAGTGACTGGTGCAGTCTGGAGATGCGAGTGGCCACACACCGGCAGCTGGAAGAGCAGAAACACAGACTCATCCTCATCTTCCTCGAACACATCTCTCCTTTTGAGCTCTCTGCTTTTCATCGGTAATTATGGGCAGTGTTGGGGGATAATGCATTACAAGTAACGTGAGTTACGTAATCAGATTACTTTTTTCAAATAACGCATTACTTTTTAAATTTACAGTTACTTTTTCAAATAAGTAATGCAAGTTACTTTGTTTTCACATTTATTGACTGACAGCTCTCCTGTCCCCATGTTGATTGAAATCGTGAGTAAGCGCAGAGGTGTTGTGTGCGCTGTGTGCGAACATGATGGTTGTTGTAGTTCTAGGCTAAATATGAGCAGGCATTTACTCATCTTGCTTGGACGAAAACAGATTCACTATTCCACAAAATCAACAGCAAAATGCAAACTCAGAATTTTATGCAAACCTGTAATAATTAAATATATTCAATTAAAATTTCACAAACATACTTTATGTATTTAATCTCACTTTATTTTCCAATGTCTTTGCTGCTGACCTTCAATGATCCAATTTAACTATACTAATAAGCAAAAATTACTTTATATTAGATTTAGAAATAAGAGTGTTGAACTTCCTCCTCCTGTATCCTGTTCTTCTTTAATCTAGAATGGCAGCACAGCTGAAAGGTTTGTTTGAGCTGCGCCCTCTACTGTACAGGCGTAAATATGCATTTCATTCAGCCTGAGGCTTATTCATTTCACTTTTGGTGTAAAAGGCAAGTGGTACTCACTGCAGAGTCTATGATGGCCAGCTCCTCCTCTCTGGACGTCCAGTGGGGTGGAGAGATAGAGTTGTGGGTAGGTTTAGGGTAGGATTAGGGTGTGGTTGTACATTCTCTCCTCCTCGCTGGACGTTAGCTCCCCCTCGCTAGACGTCCAGCGAGGGGGAGCTAACGTAAGCTTCACTTATTTGCTCTGCAATGAGCACCTTCTCGTAAAAGGGCCTTTACATTTGCCAAAAAATAGAACTTTTTTTGTTGTTATTAAAAAACAAACAAGCAAGCCCAGCCCAGGTGAGAAAAAGTAACATAAAAGTAATGTAATGCATTACTTTTCATTAAAAGTAACTAATGCAATAACTAACTTTCCCCAACACTGATTATGGGAAATTGGAAGATGACCCTCTTAAGAACATTTACTGCAAAACTGCAACATATTTAGAGATGAGTGTAGGAAGTGACAATGGATCAGCCAATATACAAAAGTTTGAGGTCCATAAA

Function

NR:

description
TLR19

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04419264_04422151.mRNA True 4131 mRNA 0.42 2 4418107 4422380

Neighbor

gene id symbol gene type direction distance location
CI01000027_04401843_04403095 S100A11, S100T, S100S coding downstream 15012 4401490 ~ 4403095 (-)
CI01000027_04324807_04339354 NA coding downstream 78753 4324676 ~ 4339354 (-)
CI01000027_04254645_04264857 NA coding downstream 153250 4254167 ~ 4264857 (-)
CI01000027_04233680_04249553 SCAP coding downstream 168554 4233642 ~ 4249553 (-)
CI01000027_04206424_04209369 NA coding downstream 208727 4205610 ~ 4209445 (-)
CI01000027_04424958_04434987 NA coding upstream 1929 4424309 ~ 4435229 (-)
CI01000027_04439446_04461699 SHC1 coding upstream 15260 4437640 ~ 4462204 (-)
CI01000027_04464282_04466128 NA coding upstream 41355 4463735 ~ 4466257 (-)
CI01000027_04524446_04527464 NA coding upstream 101431 4523811 ~ 4527464 (-)
CI01000027_04603997_04606475 NA coding upstream 181064 4603444 ~ 4608289 (-)
G141519 NA non-coding downstream 21703 4393403 ~ 4396404 (-)
G141515 NA non-coding downstream 36520 4364046 ~ 4381587 (-)
G141513 NA non-coding downstream 54872 4362849 ~ 4363235 (-)
G141475 NA non-coding downstream 127626 4290274 ~ 4290481 (-)
G141471 NA non-coding downstream 135972 4281909 ~ 4282135 (-)
G141539 NA non-coding upstream 87879 4510259 ~ 4510623 (-)
G141572 NA non-coding upstream 194626 4617006 ~ 4619841 (-)
G141490 NA non-coding upstream 207956 4630336 ~ 4637669 (-)
G141679 NA non-coding upstream 286408 4708788 ~ 4708995 (-)
G141481 NA other downstream 5297 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 492535 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 628885 3787377 ~ 3790279 (-)
G140118 NA other downstream 833428 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 2190082 2225781 ~ 2227499 (-)
G141488 NA other upstream 85095 4507475 ~ 4508971 (-)
G141728 NA other upstream 454687 4877067 ~ 4877766 (-)
G141588 NA other upstream 685955 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1026946 5447424 ~ 5450461 (-)
G141638 NA other upstream 2366247 6788627 ~ 6796707 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010670 tlr19 coding NC_007127.7 CM002900.2 22722352 ~ 22729491 (-)