CI01000027_04233680_04249553 (SCAP)


Basic Information

Item Value
gene id CI01000027_04233680_04249553
gene name SCAP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4233642 ~ 4249553 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04233680_04249553.mRNA
ATCCCTGGATGCCCGCCGGTGCCCTCGCCCTGGCCGCACACGCAGACTCGATGGCCATCAGCTGACCCCTCCTCCCAGGATGACGAGAACAGTCCAGTGTCTTCAGCTGCCTGGAGGAACAGAAGTAAGCTTTGTGAAAATGGAAACTACTTGTCACTACAGACACCGAGTTCTTTCTGAGCTGGAGAAGAGAAGTTACCCTCTGCTGAAGCTGCCTCTACCAGGAACAGGCCCTGTCGAGTTCACCACTGGAATACGAGATTACTTGGTCCCATCCCATGAGTCTCAGGGCGACCTGTCGGAGCGCCCTGATTGGAAGTTTGGAGGCGCTGTGCTTGCAGATTTACTCTTTGGTGTCCCGGGGAAGCAGACAGGTGTAAGCCTGTACAGCAGGAAGAGAGTGGTGACATACACCATCACAATTGCACTAAGCTCCTATGATGCAAGGTTTGTAGCTAGTCTCAGAGCCCGTTTAAAACAGCTTTATCCATCAGCGAACTGCACTCTGCGTGAGGACCACATGGTGCACGTTCATTTCAAAGAGGAGATTGGCATTGCTGAGCTCATCCCGCTAGTCACCACCTACATCATCCTCTTTGCTTATATCTACTTCTCCACCCGAAAGATCGACATGGTGAAATCCAAATGGGGCTTGGCGCTGGCTGCTGTTGTGACGGTTCTCAGCTCTCTGCTCATGTCTGTGGGACTCTGCACCTTGTTTGGCCTGACGCCCACGCTGAACGGAGGGGAAATTTTCCCCTACCTTGTGGTGGTAATAGGTTTGGAGAATGTCCTTGTCCTCACCAAGTCTGTTGTGTCAACGCCTGTTGACCTTGAAGTCAAGCTGCGTATTGCTCAAGGTCTAAGCAATGAGAGCTGGTCCATCATGAAGAATATGGCCACTGAACTGTGCATCATCCTCATTGGATACTTCACATTTGTACCAGCAATTCAGGAGTTCTGTCTGTTTGCTGTGGTCGGTCTAGTGTCCGATTTCTTCCTGCAGATGTTTTTCTTCACCACTGTGCTGTCTATTGACATCCGCCGCATGGAGTTGGCTGATTTGAACAGGCGTCTCCCGGCCGAAGCGGGGATGCCTCCGCCTAAACCAGGCCCTTTACGTCCACGAGAGACACCTCCACCACCTCGCCCCTCTCCCCACACAATCACCCTGCAGGCCCCTGCGTTCCGAAACCTCCGCTTGCCCAAGAGGCTCAGGGTGGTTTACTTCTTAGCCCGTACTCGCCTGGCACAACGAATTATCATGGTTGGCACTGTAATCTGGATTGGGATCTTGGTCTACACAGACCCTGCTGGTCTGAGAACTTTGCTTGCTGCCCAGGTGTCAGAGCAGAGCCCTCTTGGGGAGGCGGGGCTTCCTCCTCACCTGGGCGTGGCTCCAGTATTTCCTGGTGGAGACCCAACCAGCACACTGAGCGTGCTTCCTGCCCCTGAACCCACCCCTCTACCCGAGAACCAATCCCAGGGTCACCGAGCAGCCCGCCCAGGAGTTGCCCCTGTCTCCAGTCCCCAGATCACTTGGGGCCCTGAGGATGAGGAGCTATGGAGGCGGCTTTCTTTCCGCCACTGGCCTTCACTCTTTAGCTATTACAATATCACTCTTGCAAAGAGGTATATCAGCATTCTTCCAGTCATCCCTGTCACGCTCCATCTCAGCCCACAAGAAGCCATAGACACACGTCACCCCCAGGACACACACCACGCTCCTCCTCCCAGCATCAAGACCTCCGATCTGCAGACAGACCTCACACTCTACAAGTCATTGTTCAAAGGCCTCGCTCTTATCTATGAGGCCGTTACGGTTGTTAGATACACATCAGATGGATCTAGGGTGGCAGCTCTTGGACTTTTCGCCGGTGTGGTGTTGGTGCTCTTACTCTTCTGTCTGTATCGTGTCCTCTGCCCTCGGAACTATGGGCAGAACGGGGTGCCCCATGGTCGCCGGCGCCGTGGAGACCTGCCCTGTGATGAGTATGGCTACTCGCCGCCAATCAGCGAAATTTCCCCTCTGCTGCTGAGAGGCCACAGCATGGACATTGAGTGTCTGGCCAGTGATGGCATGCTGCTGACCAGCTGTTGTCTGGCGGGACAGATCCGTGTGTGGGACGCACAGACAGGAGACTGTCTTACTGTTATACCTAACAATGGGAGCAGCAGCAGTGGTTGTTGGGAGCATCGTGATGGCTGGGATCACATAAGTGCTTGTGAGGCCGAGGGCCTCCTGGGAGCAGACTTTCGAGAACCAGGAGGATCTATGGGTGGGCCAGATGTTGATATTTTCCCAATAAGGAGGAGGACTGCCCCTGCACGCCCTGCACTATTTGGGGACCAGCCAGACCTCACGCCTCTCATCGATACTAACTTTGGGGCTCTGCCCCCATCTCATGCTCTTGGCAGCTCTGGCTTTGACTTTGGGGGACTGGTGGAGAAAGCGTACCAGGAGCATGAGCCCTCGCCAACACTGGCCTTCCCCCCTTCTCCTCCAGCTACACAGCAAAGGCGACGTAGCCTTGGGGACCAGCCTGTCTTACCACCAGAGCTCCCCCCGCAAAGCAGTGGTGACTGGGACAGCTCAGTATGGGCCATGGAGCTGAGGGGCAACCTCATCGCCACAGGTCGCAGCAGCGGCAAACTGGAGTTGTGGGATGCAGTAGAAGGATCACTACGATGCAGTAATGAAGATGGATTATCTGGAATCACTGCCTTGGCTTTTCTTAACAACAGAATTGTGGCGGCCCGTTTAAATGGCTCACTGGATTTCTTCACTGTGGAGATCAACAAGCCTCTCGGGTTGCTTCAATATCGCGGACCCCCAGGCCGAGGCAGTCTGCCCCCCTCCCCCTGTTACAGCAGCGAGGATGTGATCAGCTGTCAGCTGACGCGCTCAGTGCAGTGTGCCCACCAGAAACCCATCACTGTGCTCAAAGCTGCCGCTGGCAGGGTCGTCACTGGCAGCCAGGACCATACAGTCCGAGTATATCGTTTGGAGGATTCTTGTTGCCTCTTCACCCTTCAGGGCCACTCGGGTGGTATAACTGCCATCTACATAGACCAGACCATGGTTCTAGCCAGCGGGGGCCAAGACGGGGCCATCTGCGTGTGGGACGTCCTAACAGGCAGCCGGGTGAGCCACGTGTACGGTCACCGTGGTGATGTCACCTCATTGGTTTGCACAACTTCCTGTATCATTAGCAGTGGGTTGGATGACCTCATTTGCATTTGGGACCGTAGCACAGGCATAAAGCTGTACTCCATACAACAGGAGGTGGGGTGTGGGGCCAGTCTGGGGGTGATCTCTGAAAGTCTGTTGGTGACGGGAGGACAAGGTTGCGTGTCATTTTGGGACCTGAACTACGGCGACCTGCTGCAGACGGTTTACTTAGGGCAGAGCAGCGAAGGTCAGAGCGTCAGGCAGCTCCTGGTTTTGGACAATGCCGCCATAGTCTGTGACTTTGGTAGTGAGCTTAGCCTAGTCTACGTGCCCTCTGTTCTGGAGAAGCTGGACTGAACATACACACGCACAAACACCAGCCCCAAGGAATTAAA

Function

symbol description
scap Predicted to enable sterol binding activity. Acts upstream of or within lipid metabolic process and lipid storage. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SCAP (SREBF chaperone).

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04233680_04249553.mRNA True 3567 mRNA 0.55 23 4233642 4249553

Neighbor

gene id symbol gene type direction distance location
CI01000027_04206424_04209369 NA coding downstream 24262 4205610 ~ 4209445 (-)
CI01000027_04156256_04198063 NEK11 coding downstream 35579 4156256 ~ 4198063 (-)
CI01000027_04039778_04040714 NA coding downstream 192928 4039109 ~ 4040714 (-)
CI01000027_04008272_04011121 NA coding downstream 221020 4008180 ~ 4012622 (-)
CI01000027_03969492_03973741 NA coding downstream 259466 3968698 ~ 3974176 (-)
CI01000027_04254645_04264857 NA coding upstream 4614 4254167 ~ 4264857 (-)
CI01000027_04324807_04339354 NA coding upstream 75123 4324676 ~ 4339354 (-)
CI01000027_04401843_04403095 S100A11, S100T, S100S coding upstream 151937 4401490 ~ 4403095 (-)
CI01000027_04419264_04422151 NA coding upstream 168554 4418107 ~ 4422380 (-)
CI01000027_04424958_04434987 NA coding upstream 174756 4424309 ~ 4435229 (-)
G141429 NA non-coding downstream 64936 4168392 ~ 4168706 (-)
G141421 NA non-coding downstream 75040 4158354 ~ 4158602 (-)
G141405 NA non-coding downstream 110222 4122321 ~ 4123420 (-)
G141402 NA non-coding downstream 113115 4120320 ~ 4120527 (-)
G141461 NA non-coding upstream 14349 4263902 ~ 4264722 (-)
G141470 NA non-coding upstream 31952 4281505 ~ 4281829 (-)
G141471 NA non-coding upstream 32356 4281909 ~ 4282135 (-)
G141475 NA non-coding upstream 40721 4290274 ~ 4290481 (-)
G141513 NA non-coding upstream 113296 4362849 ~ 4363235 (-)
CI01000027_03922380_03931033 NA other downstream 308070 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 444420 3787377 ~ 3790279 (-)
G140118 NA other downstream 648963 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 2005617 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 2107614 2119131 ~ 2125142 (-)
G141481 NA other upstream 122694 4372247 ~ 4412810 (-)
G141488 NA other upstream 257922 4507475 ~ 4508971 (-)
G141728 NA other upstream 627514 4877067 ~ 4877766 (-)
G141588 NA other upstream 858782 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1199773 5447424 ~ 5450461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002375 NA coding CM030136.1 CM030136.1 12124198 ~ 12139756 (-)