CI01000027_04324807_04339354


Basic Information

Item Value
gene id CI01000027_04324807_04339354
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4324676 ~ 4339354 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04324807_04339354.mRNA
GTAGGAAGACCCCTGTGGACTATGGCGTACAGATTCGCTTTATAAATGACCTGCAAGACACCGGAGGGGGGGTGAGTGGGCAGCCTCGGAAAGAGGGGCCCAAAAAACAGCAATCTCGCTATGGAGTGGCAGTGAGGGTGCAGGGCATCGGTGGGCAGCCCTATGTTGTACTGAAAGAGGGAGAGAAAGGAGATTCATATGGAGTACAGCTGAGAACCCAACCACCTGCCTACAGCAGCCTGCCTAGGAGGAGAGAGGATGGGGTAATCCAGGGGCCGTATTTCTCATCTGGAGATAACACCCCCTTGCGCCGTGCTCAGTCTCACGGCTCCCTGTTGGAGAGAGAAAACAGCAGCGAAGACTTTACAGATGAACTCCGACGGCCGCTTGGTGATGGACGCTCTGGTAGCTATGGCAACCTGGATGGAGGTGTTGGTATGGGACCAGAGAGGGAGCGGCCCAGAGAAAGGATGGAGAGAAATCAGTGGGGTGGCTCCTACCAGACCGGGCTGAATGGCACTTTAGGAAGAGGAAGAGGTCATTACACCTCATCTGAATCAGTCGAAGGATCTCCACACAACCAGCACACTCACAGCCAGCCAGCTCACAGCTCCATCCGTCAGCCTCCTGCCTACAGACTCGTCGACAGGTTCGACGGGGGCTCTGTTGCACAGCCGGGTAACACTGGGACCACCACCAGGGGGCACTATCCCATCCTAAAGGAGGACAACAGACCTGCCTCAACCTCACCATTGCCTGCTCCATCTCTCGTTCCAAACACGTACTCTTCACCACTGTCTTCCTCACCTGCTTCTGCCTACAGCAGCCTGGGACGTGGCTCAGGTTCTGTCGCCAAGGTCATGGCCGTCACTTCATCTGCTCCAGTTGATGCACCTGTAACCCCTGACCTGTTGATGGACCAGGGTCAAAGTTCAGGGTCAGAGTTCTCAACCGAAGATCAGATACAGCAAATAATCTACGATGTTCTACGTCAGGGAAGCACAGAGGGAGATGCTTCCATTAAACACAGAGTTCGAGTCATCTGTAATAAGATTCAAGGCTTGAAGGTGAGCAGATCTGATGACTTGAAGGAGGAGCTTGAGAAATGTCTAGATGAAAACATACAACTGCAGGAACAGCTGGGAAGGAAGAGCACAGAGCTGCACCAATCACATTCAGAGCTAACTCAGTTGCGAATGGACAGAGAGAATGCAGAGTCTCATGTTAGAGAGCTGGAGGATCAGCTGGCAGGACTACAGGAGGAGCTGAGGAGAGAGACAGACAACAAGGCTCAAGCTGACACTATGCATATGGAGTTGATGGCGGTGAGAGCTGATTTGGCTGAAGCTGCAGTGCTGCGTCAGAAGCAGGAGGACATTCTGAGGCAGAGAGAGAGGGAGCTGACTGCTCTAAAGGGTGCACTGAAAGATGAGGTCTCCACACATGACAGGGAGATAGAAGCTCTCAGAGAGCAGTACAGCCAAGACATGGAGCGACTACGAGCGAGCATGGAGCAGGTTTCACAGGCAACTATTGAAGCTGAGCGTCACCGTGTGAACTCTACGTGTGTGTATATATGGTATGTTAGGTTACTCCAGTCTCGTCTGGAGAAAGAGGAGTTTGAGGAGGAGCTGAAAGATCTGCAGGAGAAAATGACCACAATGAAACAGCAGATACCAGATCCCAAACAGACACAGACAGTCAGCCAGAAGGCCCAAGCAGATATGGATAAATTAAAAACAGATCTTGACAAGAAGACAATGGAAATAGTGTTATTAAAGAAGAGCAAACAGGAGCTTGAAGCAGAGCAGAAATATGAAATTGACAGGCTGAAGGACCAGTCACGCAGAGATAAGGAAGAGCTCACAAAAGCTCACGAGAGGGCCAAACAGCTAGCTGAACCCTCACTGGTGGAGGACTTGCGCAGGGAGTTGAGTGACATGCGAGAGGAGGTGGGCCAACTGCGCAGTCAGCTGCTCTCAGCTGAAGAAGAGCTGCAGGCAGAGAGAGACAAACTCAGCTCTGCTCAAGCCCAAGCAAACAATCTGACACATGAGCACAAGGAACTCGAGGAAACCAACACGCGTATGAAGGAGAGGCTCACACGCCTGGAGTCTCAGCTGCAGGAGCGCATGTCTCAGAGTATTGAGGCTGAGCAGGAGCAACAGGAGGAGACCAGGAGACTGAGGCAGCAGCTGGAGGAGTCAAGACGTGAGAACTCCAGACTGGGCCTGGAAAGGGACGAGCTGGCTCGTAATCTGGAAGAGAAGGAGAAGGACAGAGATGCAGTCCGCAAGGAGAACACGCAGCTCGATGACCAGAGGAGGCAGCAGGAGAGAGCGCTAGACAAACTCAATAAAGAAATGGAACGCTTGTCTGCAGCATCCCGTGAGGAGGTGCGGCTCCTGCAGGCTCAGCTGGATGAGCAGAGAGAGAAGTGGAGGAAAGAGCAGCAGGACTTGAATAAAAACACCAAAGAGAAGCTCAGTGAGCTGGAGAGAGCTCAGAGCACCATTCTTTCCCTACAGGAGGAGTTGGCCCGTCAAAAGAAGGAGCTGTTCTCAAGTTATGAGGATCGAGACAATGCTTTATTAGATAAAGAGCTGCTCACCAACCGCCTCAAACATCTGGAGAGTGAGATAGAGACTCAGCGTACCACACAAAATGACCGTTCACGAGAGATCCGCAGCTTGGAGGACAAAATCAAACATTTGGAGCTTGAGTTGGATGAGGAGAAGAACAGTGCAGAGATGCTGACAGAAAGAATCACCAGGAGCCGAGATCAGATTGAACAGCTGCGTGCAGAGCTCATGCAAGAACGATCCTCTAAACAAGACCTGGAGCTGGACAAAAATGCTCTGGAGAGACAGATAAAGGAGTATAAGTCTCGTGTAGCTGAGATGGAGGGCCAGTCACGTTCCTCTAATGGCGTGTCTCAGCTGGAGAGCAAAATCCAGGAACTCGAGGAACGACTGCGCACAGAGGAGAGAGAGAAGACCTCTGTACTGTCCTCTCAGCGACGGTTGGAGAGGAAACTAAAGGAGCTGAACATCACCTTAGATGAGGAGAGACAGCAGCACACGGAGCAGAGAGACCAGCTGACTCTGCGTGTGAAGGCTCTGAAGCGGCAGGTGGATGAGGGAGAGGCTGAGGCAGAGCGGCTGGAGGGATTGAGGAGGAAGGCCATCAGAGACATGGAGGAACAGCAGGAACAGAAGGAGGCGCTGCAGTCCAGAGTCACAGCGCTAGAGAATGAACTCAAGAGGAAGATCCAGCAGGCCCGACAGTCAGCTCTGGAGTCTTCAGTGCTCAGCTCTGAGGATGATGATGATGATGGATTGTATGACCATTCCAGCATAACCTCCATCCTCACCGAGAGCAATTTACAGACCAGTTCCTGCTGAAGTCGAGAGAGGAATCTTATCTGTGGAATGGGGTGTGAATGAGAGCTGCCCGTTGATACAGTACATAAAAGGAAAAGGATTGACGCTTCATTCGTGGACACAGAGTACCTTCAGTCCTGCTCTAAAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06102 CGN; cingulin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04324807_04339354.mRNA True 3535 mRNA 0.52 20 4324676 4339354

Neighbor

gene id symbol gene type direction distance location
CI01000027_04254645_04264857 NA coding downstream 59819 4254167 ~ 4264857 (-)
CI01000027_04233680_04249553 SCAP coding downstream 75123 4233642 ~ 4249553 (-)
CI01000027_04206424_04209369 NA coding downstream 115296 4205610 ~ 4209445 (-)
CI01000027_04156256_04198063 NEK11 coding downstream 126613 4156256 ~ 4198063 (-)
CI01000027_04039778_04040714 NA coding downstream 283962 4039109 ~ 4040714 (-)
CI01000027_04401843_04403095 S100A11, S100T, S100S coding upstream 62136 4401490 ~ 4403095 (-)
CI01000027_04419264_04422151 NA coding upstream 78753 4418107 ~ 4422380 (-)
CI01000027_04424958_04434987 NA coding upstream 84955 4424309 ~ 4435229 (-)
CI01000027_04439446_04461699 SHC1 coding upstream 98286 4437640 ~ 4462204 (-)
CI01000027_04464282_04466128 NA coding upstream 124381 4463735 ~ 4466257 (-)
G141475 NA non-coding downstream 34195 4290274 ~ 4290481 (-)
G141471 NA non-coding downstream 42541 4281909 ~ 4282135 (-)
G141470 NA non-coding downstream 42847 4281505 ~ 4281829 (-)
G141461 NA non-coding downstream 59954 4263902 ~ 4264722 (-)
G141513 NA non-coding upstream 23495 4362849 ~ 4363235 (-)
G141515 NA non-coding upstream 24692 4364046 ~ 4381587 (-)
G141519 NA non-coding upstream 54049 4393403 ~ 4396404 (-)
G141539 NA non-coding upstream 170905 4510259 ~ 4510623 (-)
CI01000027_04603997_04606475 NA non-coding upstream 230570 4603444 ~ 4608289 (-)
CI01000027_03922380_03931033 NA other downstream 399104 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 535454 3787377 ~ 3790279 (-)
G140118 NA other downstream 739997 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 2096651 2225781 ~ 2227499 (-)
CI01000027_02119227_02124423 NA other downstream 2198648 2119131 ~ 2125142 (-)
G141481 NA other upstream 32893 4372247 ~ 4412810 (-)
G141488 NA other upstream 168121 4507475 ~ 4508971 (-)
G141728 NA other upstream 537713 4877067 ~ 4877766 (-)
G141588 NA other upstream 768981 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1109972 5447424 ~ 5450461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location