CI01000027_04424958_04434987


Basic Information

Item Value
gene id CI01000027_04424958_04434987
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4424309 ~ 4435229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04424958_04434987.mRNA
AATGACAGCATATGTGATGTATGCAAAACAGTAGTATTATACATGTTCAAAGTTCTTTTACATGTCCTTTACGCAATGTAATGGACTCATGCAATGAAACTCAACCCGCAATACAGTTTAAGCTTAAATTTTTATTATATTGTCTGTTGATTTGTCACTGAAATAAAGCTGATGACTTTCTGAAGTGCTCAAGAACACTTACTGTGTGTTTTGCAGTTGCTGGACGGAGCCGCTAGGGGGCAATGTCTGAAAACAGCAACAGTGCCAATGGCAACAGCTGGACTGTTCTTACCCCAGTGGTAAAGGAGTCTGGAGTTGAGAATGTGGGTCCGGTAGCTGAAGGTCTTAAGGTCGAGGGGCAGCTCTCAAAAGCACCTGAGCCCCCATCGGAGACCAACAGTGACCTGAAGAAGCACTCCTCTGAAGCGTCTGCTCACCAGCCAGAGACAGAGACATCATCACAGTTGCAGTTGGACCCAGCGCTCACCCATGGGTCAGAACAAGCACAGGAAACTCAGGTAACATCTCCAGAGAGTGAGGGTCGGGCGCAGCTGAATGTGGCACATGTCAATGAAGACCCCAGCTCTGTCAGTGCCACTGTTGAGGACGTCAGCTCCTGGACCACTGACCATGAGGAGCGAGAAGCCCTTACAGGTCACTCAGAGAGCCCAGTTTCTCCTGGCACTGATGTTGATTCATTCTCTGACTCATACACTCACATAAGTCCTACCTCTGGATCAAGTCAACTTCCTGCTTCAGTTTGTCAGGAAAGAGACTGGTTTAAATCAGATGAGGAGTCTCTGAGGAAAACCATAACCGAAGAGTCTAAAGAAGTGTTAGAGACAAACAGGAAGGAGTGGGATGGTTTACGAAAGAGAAAAATCTCCCACCTGAGCTCTTTGGACAAGACTGAGGCAGATGATGATGAAGAGGAAGAGGAGGAAGACTTTCAGCCCCCTCAAAGAGAGGAGGAAACAGTCTTTTCTTTGAACAAGTGCATCCTTGCAGCTGTCATTCTTCTAGGACTAGGAACCATTTTTTTCTCGGGTATTCTCATGGACCTGGATGGTGAATCAGACATGGATGTTAAAGAGCTGAAGGATCCAACAAATCAGGAGTGGCTCAACCCTGAAGTCTCCAGAGACACACCTGTTGGTCTTCAGCCTCCAGATATTTTAAACAAACAGGCAAAGGAAGATCAGCAAATATTGGTACTACAGGCACAACTTCAGCAACATCAAGGTGAACTGAAAGCAGCACAGCTTCTGGCAGAGGTGGGAGAGAAAGAGCGTGTGAGGAGAGAAGAGCTGGAGAAGGAGTACCAGAGGATAAAAGGAGAACTAGACAGAGTACCTGCTCTTCAGAAGGAGCTGGAGCAAGAGAATGAGAGAATGAAAGAAGAAAATGTGAGAGCAAAGAAAGAGCTGGAGGCCCTGCCATCACTGCAGAGAGAACTGGAGCACCTGAGAGCCAAAGTTTCACAGCTCACACAGAGCACAGGTGCGAGAGAGCGGATACAGCACTATAATGGGCAGCGGGAGACGTGCAGCGGTGTGGCAGACTGCGCTCGAGTCGAGGGGCTCTCTCCGGTCGGCCTGCAGGACTTCGAAACACTTCTCCAATCCTACCTGAACAAGCTCCAGGATGCCGAGGACCAGACCTCCAGGGAAGAAGAGCTCCGTAAGCTGGTGAAGGAGTTCTTCACGGATGGAGTGTTCGCTCATGATCAGATGCCGTTCAGTGAGTTTGTGGAAGATGTGGGGGACATTCTGGAGGACATGGCTGAAGGTGAAGACAGCGACAGCGAGGGAGAGGAGAGCGATGACGATGATGACGATGAGATGGAGGAATTTGAAAAGGAGGCAATGGAGAAATTTGCACTTCCAAAGGAAGTGAGGAAGGTTGAGAGGAAGGGAGAGCAGAAGAAAGAGAGCGGAAGAGTGAAAGGTTGAAGAATCCTCAAGGTGAAAGGTACATCTGGAAACTATCGGGCCTGATTTCCTGCTTAATAATGTGGAGTGTCATTTCTAAAGAGCATATTCATTTTGATCATTAAGGCTTTGCTTTTTCTTTTCATAGATAAAGCACTACTGTAAGGCCTCAGTGATGATGGTGTCCTTCTTTAAACACTGTTCTTCTCACTTGTCATTTTTACCTTTATCTGAACATGTTATACAATATGAGTCGCCTGCTCTGTCATCTATAGATCTGGGGCTGGATTCAAGAAACTTTCTTAAGAATGAAACTTGTAACTTTTATTTTCTTATTATTTTCTGTTTTAAGAAATGTTAAGAATATTGTGTCTTACCAACAAGAATTTTTAAGAATCTTTTGTTTTTCTTAAGATGGTTCTTTTAAAAAAAAAAAAAAAAACTGACAGAGAATTAAAATTTTGGAAAATGTTAAAAATCATTGTAAATGTCATCTTCAAATTAGGATATAGACTGCAAGGATGTTTAAAAAAAATACATGGGACCATTCAAATATTTTAATATTAAGCATTATAATACTAGATCCATAATACATATTACTACTACAGTATATTTTACTTTAATAATCTAGCATACTTGTAAGTTTGTTGGATGTTTGTTCTAGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04424958_04434987.mRNA True 2601 mRNA 0.44 9 4424309 4435229

Neighbor

gene id symbol gene type direction distance location
CI01000027_04419264_04422151 NA coding downstream 1929 4418107 ~ 4422380 (-)
CI01000027_04401843_04403095 S100A11, S100T, S100S coding downstream 21214 4401490 ~ 4403095 (-)
CI01000027_04324807_04339354 NA coding downstream 84955 4324676 ~ 4339354 (-)
CI01000027_04254645_04264857 NA coding downstream 159452 4254167 ~ 4264857 (-)
CI01000027_04233680_04249553 SCAP coding downstream 174756 4233642 ~ 4249553 (-)
CI01000027_04439446_04461699 SHC1 coding upstream 2411 4437640 ~ 4462204 (-)
CI01000027_04464282_04466128 NA coding upstream 28506 4463735 ~ 4466257 (-)
CI01000027_04524446_04527464 NA coding upstream 88582 4523811 ~ 4527464 (-)
CI01000027_04603997_04606475 NA coding upstream 168215 4603444 ~ 4608289 (-)
CI01000027_04744526_04745444 NA coding upstream 309129 4744358 ~ 4746698 (-)
G141519 NA non-coding downstream 27905 4393403 ~ 4396404 (-)
G141515 NA non-coding downstream 42722 4364046 ~ 4381587 (-)
G141513 NA non-coding downstream 61074 4362849 ~ 4363235 (-)
G141475 NA non-coding downstream 133828 4290274 ~ 4290481 (-)
G141471 NA non-coding downstream 142174 4281909 ~ 4282135 (-)
G141539 NA non-coding upstream 75030 4510259 ~ 4510623 (-)
G141572 NA non-coding upstream 181777 4617006 ~ 4619841 (-)
G141490 NA non-coding upstream 195107 4630336 ~ 4637669 (-)
G141679 NA non-coding upstream 273559 4708788 ~ 4708995 (-)
G141481 NA other downstream 11499 4372247 ~ 4412810 (-)
CI01000027_03922380_03931033 NA other downstream 498737 3922242 ~ 3931033 (-)
CI01000027_03787377_03788902 NA other downstream 635087 3787377 ~ 3790279 (-)
G140118 NA other downstream 839630 3509352 ~ 3584679 (-)
CI01000027_02226447_02227499 NA other downstream 2196284 2225781 ~ 2227499 (-)
G141488 NA other upstream 72246 4507475 ~ 4508971 (-)
G141728 NA other upstream 441838 4877067 ~ 4877766 (-)
G141588 NA other upstream 673106 5108335 ~ 5201155 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other upstream 1014097 5447424 ~ 5450461 (-)
G141638 NA other upstream 2353398 6788627 ~ 6796707 (-)

Expression


Co-expression Network