RNA id: TCONS_00020892


Basic Information

Item Value
RNA id TCONS_00020892
length 3920
RNA type mRNA
GC content 0.46
exon number 13
gene id XLOC_010674
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22781854 ~ 22863603 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAGTTTCATGACATTTACTTAGACTCGACCTGCAAACGAGCCTGGCGAGACCAGCGCTTATCTCGTGTCTGGACCAACTTTGTTCTTCAGATGTGATATTTGTAGGAGTTGATCTGAAAAGCGCTTTGGAGAGCAGGACCGGAATCGAGCGGCCGAGAGGAAGCGAGCGGGATATGAACCGGCTGGGCGGGGCCTCACGGAGGGCCCGTGTGGAAGGGGGCCAGCTCGGCGGAGATGAGTGGACACGGCATGGCTCCTTTGTCAACAAGCCTACCCGAGGCTGGCTGCACTCGGACATTGTGGTCAGCACCAGCGGAGTCTCCTACACTGTCAGGTATATGGGCTGCGTGGAGGTGCTGCAGTCAATGAGAGCACTGGACTTCAACACCAGAACTCAGGTTACCAGGGAGGCGATATCAGTGGTGTGTGAGGCGGTACCAGGTGCCAAAGGAGCTCAGCGAAGGAGAAAGCCCTCCTCTCGCTGTCTGTCCTCCATCTTAGGGAAGAGTAATCTCCAGTTTGCTGGAATGACAATCACCCTCACCGTGTCGACCAGCAGTCTGAACCTAATGGCCATCGACTGCAAACAGATTATCGCCAACCATCACATGCAGTCCATCTCTTTTGCATCAGGAGGAGATCCAGACACAGCGGAGTATGTTGCATACGTCGCCAAAGACCCCGTCAATCAGCGAGCGTGTCATATCCTGGAGTGCTCTGAAGGCTTGGCTCAGGAGGTCATCAGCACCATAGGTCAGGCTTTCGAGCTCCGCTTTAAACAATACCTAAAAAACCCACCCAAAGTGGTCACCCCCCATGACCGCATGGCTCCGTTTGATGGGTCAGCGtgggaggaagaggaagaagatCTGGCTCCTCCGCCAGAGGTGCCATATTACAACAACTTCCCCGGCAAACAGCCTCCTCCTGGTGGTTTAGTGGACATGAGGACCCGTCCCGGACACAGTACAGGACCCACGCTGCCCTATGGACAGCCGAGCCAGAACGACATTCACAAGCAGCCTCTTCCTCCACTACCAGtgGGTGTTAAGGATGGAGGCTTGTTTGACGACCCCTCATACGTTAATGTGGATAAACCCCGCCTCCCAGCATCAGCAGCAGCCAATGGAAATGCTCATAGAGACGCGTTTGACATGAAACCGTTTGATGCAGCGCTCGTTGTGTCGGGTGCAGTGGCACTTCCTCTGGCAGAGCAGCTGCAGAACGAGCCCTGGTTTCACGGGCCTCTGAGCCGCAGGCAGGCCGAAAGACTCCTGACCAAGGATGGAGACTTCCTGGTGCGGGAGTCAGGCACCACACCAGGCCAGTACGTCCTCACGGGACAGCAGGGCGGACAACCAAAACACCTGCTTCTGGTGGATCCAGAGGGAGTGGTGCGCACCAAAGACCACCGCTTTGAGAGCGTCAGTCACTTGATCAGCTACCACATGGACAACCGGCTGCCAATCATCTCTGCAGGAAGTGAGGTGTGTCTGCAGCAACCGGTCGATCGCAAAGCTTGAGAAACGCTTTAGAGAGAAATAGAAACTCTCCTtcataccttttttatttttgcctgACTCTATCAGAGAAACAGTTTTTGTTCCAACTGGGAGTGTAAGCTAATCCCATCGTCCCAGAAACACTTGAGTTTTCTGCTGCATCAACCACCGGCCGTGAaattacaaagcgatgtaatcaTTCTATTCAAAGTCTAAAGCAAACGTCGCTTGAGGAAAGCGATTGCAAAAAGCCAAACGAATAGGCTTCAAGAAGAGGAGCAGATGCGTAATGGATGTGACATCACTTCCTTCCCAGTAACCATGGCAACCAGCCAGGGCATTCTTGTCAAGAGCTGATGTGAATGTAGTAAAATTGCAGACCCTTTGTAGCACTGGAAAGATTCACATGCAGTGCGGTGGGCCAAATCCAAAGACACGTTAGCGATTAGTTTTTAAATCCTGTCGTCGCTGTGGTTTCAAGACTGTTGATGAATATGCAAAACTTTAAAGACAACACAGCTCATTCTCCATCAACTGAACCACATCTGTTGTCATTTCCATTGGAAGATCCCTTTTCCCAGTGTTCCTATTGAAGAATAACACTCAGAATGCCACTCATTCTCACTCACACCACATGCCGAACACGATCCCGTGGAGAAATTGGGAATTTTGGCCATTCGGGAAGACCCCTGATCATATGTGAAAGCTTTAGCAGCTCGGATGCTGTCTGGATTTTTTGTTGCCTTATGCAATTGAGCAGATGCTGTGAGGGACATATGCTGCCCGTATTAGGTGTGATAAACTGGTCTGTGGGAAAGGGGAACATGTTCGCTTTCCACACAACATCAATCTGGGACAAAAGGGATGAGAGAAAATAATATCTAAATGAAGTGCAATCTGCATAGATGGGCTGGTAAGCTTGAATGGGACTGTGGTTTGAGATCAAAGCCTTCTTATGATGTCATTTTAGTCaagaatttatatatttgttgCAATGATGTCATCTCGTTCTGACATCAGGATGGTTTTATTCTGCGAACAGGCTCTGTTTGTCTTCGTTTCCTCCTTTTGGTGTTTCTTCTGTTCGCATTGACAATCGATcttcatgtgtgtgtatgcatatatgcATTCGGAGTCTCAAGTTACGAAACATGCATTATTTTGTCGAAAATTTACTTGAATGCATTTAATTGACGTGTATTACAAGCAGACACACCGTCCAGGCCGAGGTTAACACTCCAAATAAGTTCCGAACATGTCTTTGCAGCCACAGACTGGAAAGCAACTCTCTTTATCTTCATTTGCTCTGATATTGATTGTGCCTTTTTCACCAAACACAGACAAACCAATCAAACACAGCCGCCTTTTGTGATTCGTTGGGTAATCGTGACCCTttcttttctgaaaaaaaaaatcaactgcaAAAATGACACATTGCTTTATTGAGACTTACTACAGGTTTTCGGAAAGCATGCTTAATTTCTTCTGCAGGCTAATTGTGCTATGCTGTGCTTCGATCTCTTGGTCAGTATCATGTTATGTTGCTTAAGCTTACGTTGGTGAATAAACATCTTATTTCATCTCTCATTTGGAGACTGACATGGCCTGTAAGAGAAGGTGTAAATAATACTACGCGATTAATGTCATTCACTGTGTTGAATCAGTCTGTAAAACTCACAGGATTGTACTGGGTGAAAAAAACAAAGGTGTAAGATTTGACAATGCAGTCACATCGTGTTTATAACACAAATCTATGTAAATGATAAGAATTTGCTTCGTCAGATGTACAAAGACCTTTATCTGGATGCTTTATCAATCTGAAATGGGCAATTGTTCTGTTCTTAGTTGTTTTTCATGGATGTAATTTGTGAATTTTGAGTCATTGGTCAGCATTCATTCAGCATGACAATTTCAGGCAGATTCCAGCTGCGGCTGTGTGTGACAGGTTTCAGCCTGGTGTAATTCAAAGATACGCATTGAATGGGTTTTTTAAGCATTTGACGTCACACTTTTTATGTGCTGATGGCACCACAGATCTGTTCACTAACTGCTAATGGAGTTTaaacagtgtatgtgtgtgttggctGGAATGGTCTGGAATAATCTGGCTTTTACATTTGACTCGCCACTGAACTGTTTGCTCATTTTCATATTTCACAGCGGCCTTTTGTTGCATGGAAACACTTCCTGTTATTGTGGTCATGACGGTGACTTTTGTGTTGTGGTTAGCTGTTTGCTATTTTCTAAGCCAAATGCGTTTATTTCTTGTTTGCCTATATAAATGttgcttcttttttaaatacatgtttttggGTATTTCAGTAATTCTTTTTATGTTGATGTTATTTGGAAAAACATAAACGTTTACACCTGTATCAAATGATAgattacatatataaatacatatatcatTCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0030971 receptor tyrosine kinase binding molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
ko04013 MAPK signaling pathway - fly
ko04012 ErbB signaling pathway
ko04014 Ras signaling pathway
ko04072 Phospholipase D signaling pathway
ko04510 Focal adhesion
ko04650 Natural killer cell mediated cytotoxicity
ko04062 Chemokine signaling pathway
ko04910 Insulin signaling pathway
ko04915 Estrogen signaling pathway
ko04917 Prolactin signaling pathway
ko04926 Relaxin signaling pathway
ko04935 Growth hormone synthesis, secretion and action
ko04722 Neurotrophin signaling pathway
ko05206 MicroRNAs in cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05214 Glioma
ko05220 Chronic myeloid leukemia
ko05224 Breast cancer
ko05100 Bacterial invasion of epithelial cells
ko05034 Alcoholism
ko01521 EGFR tyrosine kinase inhibitor resistance
ko01522 Endocrine resistance

ZFIN:

id description
ZDB-GENE-030131-2538 Predicted to enable receptor tyrosine kinase binding activity. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Orthologous to human SHC1 (SHC adaptor protein 1).

Ensembl:

ensembl_id ENSDART00000147609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021805 lncRNA downstream 266489 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00021804 lncRNA downstream 267547 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00022157 lncRNA downstream 413570 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00022156 lncRNA downstream 446493 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00020863 lncRNA downstream 717554 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00022158 lncRNA upstream 31328 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020897 lncRNA upstream 153609 23016957 ~ 23019562 (-) False XLOC_010676
TCONS_00022159 lncRNA upstream 153609 23016957 ~ 23019603 (-) True XLOC_010676
TCONS_00020900 lncRNA upstream 472582 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00022160 lncRNA upstream 473142 23336490 ~ 23337574 (-) True XLOC_010677
TCONS_00020889 mRNA downstream 564 22779229 ~ 22781446 (-) True XLOC_010673
TCONS_00020885 mRNA downstream 6482 22750174 ~ 22775528 (-) False XLOC_010672
TCONS_00020895 mRNA upstream 33105 22896453 ~ 22930925 (-) False XLOC_010675
TCONS_00020896 mRNA upstream 55591 22918939 ~ 22989262 (-) True XLOC_010675
TCONS_00020901 mRNA upstream 475714 23339062 ~ 23346095 (-) False XLOC_010678
TCONS_00020903 mRNA upstream 490193 23353541 ~ 23372666 (-) False XLOC_010679
TCONS_00020904 mRNA upstream 490196 23353544 ~ 23379464 (-) True XLOC_010679
TCONS_00020856 other downstream 864685 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 958761 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 973655 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1318292 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 1330726 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020898 other upstream 472180 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 472194 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 476042 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 659913 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020907 other upstream 729116 23592464 ~ 23592599 (-) True XLOC_010682

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_04439446_04461699.mRNA True 3847 mRNA 0.46 13 CI01000027 4437640 ~ 4462204 (-)