XLOC_010642 (FP015862.4)


Basic Information

Item Value
gene id XLOC_010642
gene name FP015862.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21790604 ~ 21808355 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020842
ATGGCTTCAGCTCTGTCTCTTTACCTCATGTGTCCGGTGTGTCTGAGTGACTTCAAAGTTCCAGTAAGTTTGCCCTGTGAACATGTTCTCTGTCGGCAGTGTGCTTCCAGGTATTTAGAATCCAGCAAAGGACCTCATAAATGCCCAGAATGCAGACAAAACTTCACCAGGACGGATCTTAAAGGTATTCGAGTTCTGAGAAATGTTGTGGACGCCATACAAGAACAGCGTAAGAAAAAGCAATTGATTCAACCGAACGCAGAGGAAATGCTGTGTTCTGAGCACAAGGAGCCGCTTAAACTTTTCTGTGTCAATGACCAGAGATTAGTTTGCCTCATCTGCAAAGAGGGAATGAAACACAGCGGACACAGTTTCAAACCTGTAAAGGAAGCTAAGGAGATGAGTGAGaAAATGGTGAACAAAGCATTGAGTTTTATTTTAGATGACAACAAGCAAATGGGTGACATGATCCTGAATCAGACGCTTGAAATCACAAAATCCAAGGAAAGGGCCAAACATCTTGAGACCCTTATGCATGCTCAGTTTAAGAAAATGCATGACTTCTTGTTGAAAAAGGAGGAGGATGCAATGAGACAGATCCAGAAAGCAGCAAACAGTGCTGAGGAATCAATGAAGCATAATGGGTCGTTGTTGTCAAAGTTGCAAATAAAAGGAAACAGCCAGGTGTCCATATTGGAGTCAGGACTAAAGATAAACCAGCCAGAGAGGTTTTTAGAGTGGTGGAGTAAAGACGGGTTTCCTTTGGTTAATGAAATCAGCGAGAGCAAAAACATCAATCCTAGCTCAATTTCATTTAAGTCGAAACATGATGGCGTTCGAGTGATTTGTGACCATTTTACCCTTGGGCCTTATGAAACTGACCTTCCGCTCATGGTTTGGCGAGACATGCTGGGTCCTGTTAAAcccttccccttaaccctcggttgtaagggccaaggggaagggATTCTAAAGTTTTCACCC
>TCONS_00021799
aaaaatgcatttgtgagGTCAGTTAATTTTTGGTGTTagtcattattatttgtattccATATTTTATAGGAAGGAAGAACTTACATCCAGAGGAAGATAGAGATGCCTGCAATATTAGATTGTGCTTCCAGGTATTTAGAATCCAGCAAAGGACCTCATAAATGCCCAGAATGCAGACAAAACTTCACCAGGACGGATCTTAAAGGTATTCGAGTTCTGAGAAATGTTGTGGACGCCATACAAGAACAGCGTAAGAAAAAGCAATTGATTCAACCGAACGCAGAGGAAATGCTGTGTTCTGAGCACAAGGAGCCGCTTAAACTTTTCTGTGTCAATGACCAGAGATTAGTTTGCCTCATCTGCAAAGAGGGAATGAAACACAGCGGACACAGTTTCAAACCTGTAAAGGAAGCTAAGGAGATGAGTGAGaAAATGGTGAACAAAGCATTGAGTTTTATTTTAGATGACAACAAGCAAATGGGTGACATGATCCTGAATCAGACGCTTGAAATCACAAAATCCAAGGAAAGGGCCAAACATCTTGAGACCCTTATGCATGCTCAGTTTAAGAAAATGCATGACTTCTTGTTGAAAAAGGAGGAGGATGCAATGAGACAGATCCAGAAAGCAGCAAACAGTGCTGAGGAATCAATGAAGCATAATGGGTCGTTGTTGTCAAAGTTGCAAATAAAAGGAAACAGCCAGGTGTCCATATTGGAGTCAGGACTAAAGATAAACCAGCCAGAGAGGTTTTTAGAGTGGTGGAGTAAAGACGGGTTTCCTTTGGTTAATGAAATCAGCGAGAGCAAAAACATCAAGTTTGCCATTCCAACCAAATTTAAGTCGAAACATGATGGCGTTCGAGTGATTTGTGACCATTTTACCCTTGGGCCTTATGAAACTGACCTTCCGCTCATGGTTTGGCGAGACATGCTGGGTCCTGTTAAACGAGACCTATCAGATTCATCTACAATGGACAAAGACCTAAAACTTGCTTTCAAAAAGGAGAATCATCTGCAGCCTCAAGGCGAAGATTACTTTGCCAGATTCCAGAAATTTCACAACGGTTACAGGGAGAATTATGTGGAGAGCATTCAGCCGGGTCAGGTGTACTGGGAGGTCGATATCGAAGCTGAACCAGGATGGGAACGAGGACTTACTGTTAGATATTACCCAAAAGAGAAGAACACATCCCTCTGGCAGACATTATTTAACAAAGGTTTTGAGAACATTTCTCTTTCTGTAAAAAATGGTCGACTGTATGCTGTAAGAGGTGATAAAGAAACCCTAATCGCCAACCAGACTAAACCCCGCAGAGTCGGGGTTTACGTGGACAGTGTGAAACACCAGGTTGTGTTTTGCAATGCAGACAGTATTTCTCTCATTCACACAGTGTGGTGTGGAGATCAATAGTTCTTCATTATAAATCAAGGATATTTACATCTGCTTTGAATTATGAGGGGCATTCATGAAtcatttatagtaaaaaaatatatatatattttttttttatcatcctGTTAATTGTTGTACAtggtaaataaaatattgtgct
>TCONS_00020844
ATCATTGACCTGAACCGAAGATATTATTCACAGAAGCAGAAATTAAATTCTGTATGACTTTTGGATCATTAATCAGAGGTATGAAATGTCTGTTTATGCTAATAATTTTATACTATTGCATGTTCAATGTTGGTGAATTTGCAATTTTTATTGGATTTCTTTGATTTTATTAAAAAGGTCATTTAAACTTTACCATATTGACTTTCTCTCTCTCATCCATCCACATGTTTCCTTTAGTGATTGTGACTATTATTGAGATTATGGTGTTTGCTGCTCCTACTGTGATTCTTCTTCAGATCATCTTTGCAAGACGAGCTGGAAGGAAGAACTTACATCCAGAGGAAGATAGAGATGCCTGCAATATTAGATGTAAatctaattaaagggatagttcaccaaaaaatttttttaatttacttagtTAACTCTCCCCATGTGGTtacaaaccattatgagtttctttcaaaATAGAAcaataagaagatattttgaaaaatgttagaaactgcTGCCCATTcacatccatagtaggaataaCAAAGAGGTCagtgttacaggtttccaacactattcaaaataactttttgaacattttttactTTAAGGAAAGAAATTCTAACAGGTTTGCAACATGTACAAgggtgagtaaaggatgacagaattaTCAGAAATATCCCTAAAGTTTATTGTGCAAATTTAGCATAATTTCATGTAATTTCCCAGTGCTATATTGTAAATACTGCTTTCAAGTAAGAACTGTTTGTGTGTACTGTACTGTGCACTATAAAAAAATATCTGATACTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097470 ENSDARG00000115550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020842 False 984 mRNA 0.43 8 21790604 21799407
TCONS_00021799 False 1555 lncRNA 0.40 7 21793290 21807977
TCONS_00020844 True 805 processed_transcript 0.31 2 21807422 21808355

Neighbor

gene id symbol gene type direction distance location
XLOC_010641 si:ch73-86n18.1 coding downstream 5343 21779920 ~ 21785261 (-)
XLOC_010640 cops7a coding downstream 13059 21751922 ~ 21777545 (-)
XLOC_010639 si:ch211-154o6.2 coding downstream 98580 21673723 ~ 21692024 (-)
XLOC_010638 gnl1 coding downstream 122522 21651712 ~ 21668082 (-)
XLOC_010637 ddr1 coding downstream 169655 21547583 ~ 21620949 (-)
XLOC_010644 dicp3.3 coding upstream 63 21808418 ~ 21810668 (-)
XLOC_010645 FP015862.1 coding upstream 14379 21822734 ~ 21823249 (-)
XLOC_010646 si:ch73-322b17.4 coding upstream 18977 21827332 ~ 21829594 (-)
XLOC_010647 NA coding upstream 27825 21836180 ~ 21836568 (-)
XLOC_010648 si:ch73-34h11.1 coding upstream 43501 21851856 ~ 21853082 (-)
XLOC_010626 CR392024.2 misc downstream 895429 20895112 ~ 20895175 (-)
XLOC_010635 BX469919.1 non-coding downstream 339320 21451155 ~ 21451284 (-)
XLOC_010633 NA non-coding downstream 565726 21218342 ~ 21224878 (-)
XLOC_010630 NA non-coding downstream 707585 21079589 ~ 21083019 (-)
XLOC_010627 NA non-coding downstream 863479 20923482 ~ 20927125 (-)
XLOC_010623 CR354600.1 non-coding downstream 1396795 20393693 ~ 20393809 (-)
XLOC_010649 NA non-coding upstream 46941 21855296 ~ 21856351 (-)
XLOC_010653 NA non-coding upstream 151770 21960125 ~ 21990338 (-)
XLOC_010654 NA non-coding upstream 200764 22009119 ~ 22012320 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01149693_00004608_00004897 NA coding CI01149693 null 4252 ~ 4897 (-)