RNA id: TCONS_00020844


Basic Information

Item Value
RNA id TCONS_00020844
length 805
RNA type processed_transcript
GC content 0.31
exon number 2
gene id XLOC_010642
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21790604 ~ 21808355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATTGACCTGAACCGAAGATATTATTCACAGAAGCAGAAATTAAATTCTGTATGACTTTTGGATCATTAATCAGAGGTATGAAATGTCTGTTTATGCTAATAATTTTATACTATTGCATGTTCAATGTTGGTGAATTTGCAATTTTTATTGGATTTCTTTGATTTTATTAAAAAGGTCATTTAAACTTTACCATATTGACTTTCTCTCTCTCATCCATCCACATGTTTCCTTTAGTGATTGTGACTATTATTGAGATTATGGTGTTTGCTGCTCCTACTGTGATTCTTCTTCAGATCATCTTTGCAAGACGAGCTGGAAGGAAGAACTTACATCCAGAGGAAGATAGAGATGCCTGCAATATTAGATGTAAatctaattaaagggatagttcaccaaaaaatttttttaatttacttagtTAACTCTCCCCATGTGGTtacaaaccattatgagtttctttcaaaATAGAAcaataagaagatattttgaaaaatgttagaaactgcTGCCCATTcacatccatagtaggaataaCAAAGAGGTCagtgttacaggtttccaacactattcaaaataactttttgaacattttttactTTAAGGAAAGAAATTCTAACAGGTTTGCAACATGTACAAgggtgagtaaaggatgacagaattaTCAGAAATATCCCTAAAGTTTATTGTGCAAATTTAGCATAATTTCATGTAATTTCCCAGTGCTATATTGTAAATACTGCTTTCAAGTAAGAACTGTTTGTGTGTACTGTACTGTGCACTATAAAAAAATATCTGATACTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020843 lncRNA downstream 4311 21800385 ~ 21803111 (-) True XLOC_010643
TCONS_00022153 lncRNA downstream 267693 21538847 ~ 21539729 (-) True XLOC_010636
TCONS_00020828 lncRNA downstream 345747 21455938 ~ 21461675 (-) False XLOC_010634
TCONS_00022151 lncRNA downstream 582544 21218342 ~ 21224878 (-) False XLOC_010633
TCONS_00022152 lncRNA downstream 582544 21219495 ~ 21224878 (-) True XLOC_010633
TCONS_00022154 lncRNA upstream 27825 21836180 ~ 21836568 (-) True XLOC_010647
TCONS_00021800 lncRNA upstream 46941 21855296 ~ 21856351 (-) True XLOC_010649
TCONS_00021801 lncRNA upstream 108253 21916608 ~ 21917291 (-) True XLOC_010651
TCONS_00021802 lncRNA upstream 151770 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00022155 lncRNA upstream 191493 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00020842 mRNA downstream 8015 21790604 ~ 21799407 (-) False XLOC_010642
TCONS_00020841 mRNA downstream 22161 21779920 ~ 21785261 (-) True XLOC_010641
TCONS_00020840 mRNA downstream 29877 21751922 ~ 21777545 (-) True XLOC_010640
TCONS_00020839 mRNA downstream 115398 21673723 ~ 21692024 (-) True XLOC_010639
TCONS_00020838 mRNA downstream 139340 21651712 ~ 21668082 (-) True XLOC_010638
TCONS_00020845 mRNA upstream 63 21808418 ~ 21810668 (-) True XLOC_010644
TCONS_00020847 mRNA upstream 18977 21827332 ~ 21829578 (-) False XLOC_010646
TCONS_00020848 mRNA upstream 18983 21827338 ~ 21829594 (-) True XLOC_010646
TCONS_00020849 mRNA upstream 43501 21851856 ~ 21853082 (-) True XLOC_010648
TCONS_00020850 mRNA upstream 73339 21881694 ~ 21888047 (-) False XLOC_010650
TCONS_00020829 other downstream 343704 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 356138 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020809 other downstream 912247 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020803 other downstream 1314726 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 1413613 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020846 other upstream 14379 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020856 other upstream 104560 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020893 other upstream 984720 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1527173 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1527187 23335542 ~ 23337575 (-) False XLOC_010677

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01149693_00004608_00004897.mRNA True 536 mRNA 0.34 2 CI01149693 4252 ~ 4897 (-)