RNA id: TCONS_00020839



Basic Information


Item Value
RNA id TCONS_00020839
length 1311
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_010639
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21673723 ~ 21692024 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGGAGGACTCGCATTTCAGCTCTTCATACTTCTGGTCTCCTGTGCAGGGGCAGATCGAGAATGCTGTATTTCTCAATAAAGTAAAGGAGCAGCTTGGTCATGACAAAAGCCCCACCTACTCACATGGCCCTGCCCACTATCCCCCTACAGCAGTGGTGGCTGTCGCTGGGGGTCCCATGGAAGCACCGACATCAAGAACACTAAAACAAGAGCATGTGCAACCGTCCCATTCCTCACACAGTATAACAGTGGTGCCGGTACCACCTTCTGGCATCATGACGGcagCGGGTTTGGTCACCCTGGTGTCTCCGGTGTCTTCGGCTCAGTCTCTTATTCCTGGACACCCCTCAATGATAACAGTCCAGACAGACAAGAAAAATGACTCCTTGCCCTGCTCACCGGTCATCATCCCATTACCTTCCAAACGTtgcagaaagaagaaagaaacactcCCGCTAGTTGGCTCTCCTACTGGGACAGATCCCTTGATTTTGGGTCTTTCAGGACAGCATCTTTCTACACACCCTTATAGCCTCTCCCCAGAAGAAGGGCATGCTGGGAAAGAAGGCAGCAAAACATACAGAAACCACACAGAATCCAAACCTCACAAGTGTCCTCACTGCACGAAATCATTTGCCAACTCAAGCTACCTTGCTCAGCATGTGCGAATACACACTGGAGTTAAACCGTACACCTGTAGCTACTGCGAGAAGACCTTCAGACAGCTCAGTCACTTACAGCAACACCACAGGATCCACACAGGAGACAGGCCATACAAATGTACACACATGGGCTGTGAAAAGTCTTTCACTCAGCTCTCTAATTTGCAGTCCCATCGGCGTCAGCACAACAAGGACAAACCATACAAGTGTCACCACTGTAATCGAGGATATGTAGACGCAGCCGGCCTGGATATTCATCTGTCCACGCACACGGTTAAGCATGCTAAGCTGTACTCCTGTGGTTTATGCCACCGCACATATACCTCGGAGACGTATCTAATGAAGCACATGCAAAAACACGCTCCGGATATGCTTCCATCTCCACCTGGATCAAACCAGCATAGTCACAGTCCCGGACGCGCTGGAGGAAGCGGTTCAGAAGGAGACGGGCAGAGCAGAATTGAAAGGAGTGATGTTTTTGTCCAACCGGTCAGTGTGCCGTGTGTGTATGACATGAACCAGTACAAACCAGTACCTGCAGCAGACGTGCAGTACAAAACCGTCAGCGTGTCTGACATCTCCCCTCACAAAGACCTCTGCATCACCGTGGAGGCTTCAGCCATACAGGCGAACCACCTGAACTCTTGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000123597

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022153 lncRNA downstream 133994 21538847 ~ 21539729 (-) True XLOC_010636
TCONS_00020828 lncRNA downstream 212048 21455938 ~ 21461675 (-) False XLOC_010634
TCONS_00022151 lncRNA downstream 448845 21218342 ~ 21224878 (-) False XLOC_010633
TCONS_00022152 lncRNA downstream 448845 21219495 ~ 21224878 (-) True XLOC_010633
TCONS_00020820 lncRNA downstream 527100 21144669 ~ 21146623 (-) False XLOC_010632
TCONS_00021799 lncRNA upstream 101266 21793290 ~ 21807977 (-) False XLOC_010642
TCONS_00020843 lncRNA upstream 108361 21800385 ~ 21803111 (-) True XLOC_010643
TCONS_00022154 lncRNA upstream 144156 21836180 ~ 21836568 (-) True XLOC_010647
TCONS_00021800 lncRNA upstream 163272 21855296 ~ 21856351 (-) True XLOC_010649
TCONS_00021801 lncRNA upstream 224584 21916608 ~ 21917291 (-) True XLOC_010651
TCONS_00020838 mRNA downstream 5641 21651712 ~ 21668082 (-) True XLOC_010638
TCONS_00020836 mRNA downstream 52774 21547583 ~ 21620949 (-) False XLOC_010637
TCONS_00020835 mRNA downstream 52776 21547583 ~ 21620947 (-) False XLOC_010637
TCONS_00020834 mRNA downstream 52776 21547583 ~ 21620947 (-) False XLOC_010637
TCONS_00020833 mRNA downstream 52776 21547583 ~ 21620947 (-) False XLOC_010637
TCONS_00020840 mRNA upstream 59898 21751922 ~ 21777545 (-) True XLOC_010640
TCONS_00020841 mRNA upstream 87896 21779920 ~ 21785261 (-) True XLOC_010641
TCONS_00020842 mRNA upstream 98580 21790604 ~ 21799407 (-) False XLOC_010642
TCONS_00020845 mRNA upstream 116394 21808418 ~ 21810668 (-) True XLOC_010644
TCONS_00020847 mRNA upstream 135308 21827332 ~ 21829578 (-) False XLOC_010646
TCONS_00020829 other downstream 210005 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 222439 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020809 other downstream 778548 20895112 ~ 20895175 (-) True XLOC_010626
TCONS_00020803 other downstream 1181027 20402220 ~ 20492696 (-) True XLOC_010622
TCONS_00020802 other downstream 1279914 20393693 ~ 20393809 (-) True XLOC_010623
TCONS_00020844 other upstream 115398 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020846 other upstream 130710 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020856 other upstream 220891 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020893 other upstream 1101051 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1643504 23335528 ~ 23336562 (-) False XLOC_010677

Expression Profile


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