RNA id: TCONS_00022155


Basic Information

Item Value
RNA id TCONS_00022155
length 654
lncRNA type sense_over
GC content 0.48
exon number 8
gene id XLOC_010652
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21946091 ~ 22006996 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTGCAACTGTTCAGCTTCAGTACACACCCGTCACCTCAGCATCGCCTGGTTTATCTGGAGAAAGAGAACAGCGTGATGGGGTTTTACAGAGAGGTTTTCATCCTCTCTTTACTAGTCCAGTTGGCTGCAGTAATGTCCCAAGATATGGTGGCATCACAGATGCTTAATAGTAACCAGTCAACCATCGGCTTTCCAAGACTACCTGCAGACTTTAGGGAAATGGCCAAGAAACTGaTGATCACATGCTCCAACAAAGGTTACCAGATGCCTGCAATGAACCACACACAGAACAGCTCTCATGCACAGATGATGGAGAGTCCTGTGCCTGTGTTTCTGGAGCTTCTCTCCTCAATACCTCCATTTTCTCACGCTCGCCCCTATATGAAGCCCAATGACACGGCAGAGGAACAGGAAATAACTAGGAACTTTGCTGAGAAGATGCGGAACTGCACCAATATGGGCCATATGATTGAGTTCATGAGGAATGCTACAGAAGGTCCTCGTTGTTTCATGCGGGCCTTCGTGGCTCCACTTTCCTGGACAATCATCATGCAGAACGGAACAGACCTCCTGAAAGAGGACCTAACAAAGCTTTTATGGGCGGCTAAACCTTTTTTGGAAACAATGCCTCCATCTAGCTTTGTGCTGCCA

Function

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021802 lncRNA downstream 9510 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00021801 lncRNA downstream 82557 21916608 ~ 21917291 (-) True XLOC_010651
TCONS_00021800 lncRNA downstream 143497 21855296 ~ 21856351 (-) True XLOC_010649
TCONS_00022154 lncRNA downstream 163280 21836180 ~ 21836568 (-) True XLOC_010647
TCONS_00021799 lncRNA downstream 191871 21793290 ~ 21807977 (-) False XLOC_010642
TCONS_00021803 lncRNA upstream 2667 22009119 ~ 22012300 (-) False XLOC_010654
TCONS_00020861 lncRNA upstream 2688 22009140 ~ 22012320 (-) True XLOC_010654
TCONS_00020863 lncRNA upstream 54117 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00022156 lncRNA upstream 327840 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00022157 lncRNA upstream 356020 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00020855 mRNA downstream 82487 21908957 ~ 21917361 (-) False XLOC_010651
TCONS_00020853 mRNA downstream 84625 21892348 ~ 21915223 (-) False XLOC_010651
TCONS_00020852 mRNA downstream 87638 21891811 ~ 21912210 (-) False XLOC_010651
TCONS_00020854 mRNA downstream 96765 21898224 ~ 21903083 (-) False XLOC_010651
TCONS_00020851 mRNA downstream 111801 21883431 ~ 21888047 (-) True XLOC_010650
TCONS_00020862 mRNA upstream 9196 22015648 ~ 22022456 (-) True XLOC_010655
TCONS_00020864 mRNA upstream 170802 22177254 ~ 22194400 (-) False XLOC_010657
TCONS_00020865 mRNA upstream 171663 22178115 ~ 22192006 (-) True XLOC_010657
TCONS_00020866 mRNA upstream 193058 22199510 ~ 22225295 (-) True XLOC_010658
TCONS_00020867 mRNA upstream 230509 22236961 ~ 22251457 (-) False XLOC_010659
TCONS_00020856 other downstream 82523 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 176599 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 191493 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 536130 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 548564 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 786623 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1329076 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1329090 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1332938 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 1516809 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU109978 True 342 lncRNA 0.48 5 CI01000016 3809510 ~ 3811499 (-)
rainbow trout (Oncorhynchus mykiss) TU109978 False 891 TUCP 0.37 2 NC_048565.1 89659261 ~ 89660421 (+)