RNA id: TCONS_00020861


Basic Information

Item Value
RNA id TCONS_00020861
length 335
lncRNA type lincRNA
GC content 0.37
exon number 4
gene id XLOC_010654
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22009119 ~ 22012320 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCATCGCGTCTCTTTATGATGGCGGACAGAAACGATCTTGAGAAACTTGATTTCGGCGCTTTAAGTCTCGACCAACAGGTGAAGCTACGACAGTTCAAGATCAAGACAAGAATTGCCAATGAAAAATATTTGAGGTTTCACCCAGAGGTGGAAATGTTACTGAGTGACTTTTTAAGAAACGTGTTTCTGAAAAGGCCTGCAGATGTTCATGAATTTGCAGCAGatCATTTCAGTGACCCTGGATTGCCAACAAAAATTCAGgcccaaataaaaatcaataataagtGAAAGTGTATATGTTCTTAATTTTATTGTAtatctttttaataaaag

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000143408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022155 lncRNA downstream 2688 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00021802 lncRNA downstream 18802 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00021801 lncRNA downstream 91849 21916608 ~ 21917291 (-) True XLOC_010651
TCONS_00021800 lncRNA downstream 152789 21855296 ~ 21856351 (-) True XLOC_010649
TCONS_00022154 lncRNA downstream 172572 21836180 ~ 21836568 (-) True XLOC_010647
TCONS_00020863 lncRNA upstream 48249 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00022156 lncRNA upstream 321972 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00022157 lncRNA upstream 350152 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00021804 lncRNA upstream 499662 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00021805 lncRNA upstream 499662 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00020857 mRNA downstream 2144 21946091 ~ 22006996 (-) False XLOC_010652
TCONS_00020860 mRNA downstream 4738 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020859 mRNA downstream 4738 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020858 mRNA downstream 4738 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020855 mRNA downstream 91779 21908957 ~ 21917361 (-) False XLOC_010651
TCONS_00020862 mRNA upstream 3328 22015648 ~ 22022456 (-) True XLOC_010655
TCONS_00020864 mRNA upstream 164934 22177254 ~ 22194400 (-) False XLOC_010657
TCONS_00020865 mRNA upstream 165795 22178115 ~ 22192006 (-) True XLOC_010657
TCONS_00020866 mRNA upstream 187190 22199510 ~ 22225295 (-) True XLOC_010658
TCONS_00020867 mRNA upstream 224641 22236961 ~ 22251457 (-) False XLOC_010659
TCONS_00020856 other downstream 91815 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 185891 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 200785 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 545422 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 557856 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 780755 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1323208 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1323222 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1327070 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 1510941 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU108591 True 257 lncRNA 0.33 2 CI01000016 3804708 ~ 3806000 (+)
rainbow trout (Oncorhynchus mykiss) TU108591 True 1025 lncRNA 0.39 3 NC_048565.1 88131038 ~ 88132587 (+)