RNA id: TCONS_00020865


Basic Information

Item Value
RNA id TCONS_00020865
length 2555
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_010657
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22177254 ~ 22194400 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGACGTTACAGTGGACAATGTGTCGTTGGCTTCAGCCAGAGTcatgaataaaaaatacacacacaagcagaaaGAAGACATCACTGCCAGCTGGACATCCCAGAGACACAAACATCCTTCTACACAATTAGCTAATATAAAGGGAGATGTGCCAACTACAACATACCAAAATATGATGTCTGCTATATACTCTAAAACTGAAGTGGGCACAACTGTCACCGTTAAACCATCTATAACCACCAGAAAGGAGCAGAACACTTCTCAACGTGTTTTGCGTGCTGTCAGTCAAACACCTGGAGAGGAAGAAGAGACGTTTGGTATCACACAGTGGAGCGATTTTGATGAAGATGATTATGAGGACTATGATTATGAAGAGGAGCGATCCAGGGTGACACGGGGAATCAAAAAACAAACACGCTGGACTTTAAATGGAAGACAGGTGCATGCCGGAGTGGAAAGAGGAGGAATTTTGAGACGGCCACATCTCAGCTGGGCAGATGCTGGAAATTACAGTTGCTACAGAGGAGAGAGACTCATTTCCACATTCAGAATCAGTGTAGGGGCACCCCCCGAGCGTTCAGCTGTCTTATGCAACATGAAGTCTCATACTAGTAAGGTCCGCTGTGAATGGACGTCCAAACAACCGGTAATTCCACGGCCAGTGTGTTACCTTCTTCTTAATAGAAGatttttaaaaaacaccATTCATGTGAACTGTTCTTTCTCCCGGTCCCGCTGTTGGTGTGCTTTCTTTGTGAAGGAGGAGTACCTTAGGGATCTCCATAGGGCACAAATATGTGTGTCTAACATAGCAGGCAGTGCAATGAGCCCTGTACTCAACTTTAACCCACATGACACCCTAAGGCCAGACCCACCAAGCAGAGTTCTGGTGAGTGCAGTTGAGGGCCTGAAGCATGTGCTTAAAGTATCCTGGTCTTATCCCAGTTCCTGGAAGAATAGATTTTATGTCCTGCAGTTCCATCTGAGATACCGACCACAATTTGCAGAGCAGTACCAGTTTGGGGAGATATCTGACAAGATGGAGAGACGACTGTCATGGATGATTTATGATGCTCTACCAGACACTGTATATGAAGTGCAGCTTAAGGCCAAAGATGAGTTTGATGGTAGCTGGAGTGACTGGACAGAACCTGTCTTTGCAGTCACATGGTCAGCTCCTGAGACAACTACTGCCACTGAGACCATTACTTTTGAACCAAATGAGGTGCTTTATGAAGGCTCAGGAGGATTTGGAGAAGAGCCTGGTGTAGACTCAGTGGTAGTAGCTGGAGATGCTGATACCGAATATGCTACAGTCTGGCTGTATGTGTCTTGTGCTTTTGGGCTGTGTTTTTTTGTAATCACCGTGCTTACTGTCTATTTTCTCAGGAATAGGACTCATTTGATTGCTAAAATAGGGAAACAAACTATGCCGTTTACTTCCCTCCTTCGTTCCTCTCAGCCTCTGTCTGCTCCTGCTGCCTCTGAACAGCTTCCCGAGGAGGGGAAGTCACTTATGTCTCCTCCCAAACACAACCAGCAACACTTCCTTCCTGCTCAGCCAGAGGAGCAGGATGCCATTCATCTGCATAACATCGATTATTTTCTGTCTCCAGGAGCCGAAGGTGTGCCATTgacaataaacagaaatgaataaacaaatgaaacccCGCAGTGGGTCACACACTGTTTCATGTGATAGAAAAACAGCATTATTATGTTGAAAAATCAACTTGGAGTGTCATATCCTAGGTTGGGTTTTcatgtcagatttttttctgaCTTTCAAAACCATTTGTAATTACGGATTTTTAAAACAAGCCTTCTATAGAAaactttttacaaatatttccttaGACAACCCACCATTTGTTGACCATGGCAGTCTTCCATGTGAAGCTAAAgcacttttttattaaatagttttgaaTAAATGCCTGTTAACATCAAATATGATAGCTAAGATGACTGGTTTTAAATTATAAGTTAAAGAAATACACAGTTTTTGTTTATCTGATGAATGATATAAACTTTGACAGCCAGTCTTATTCAAGATTACTGTAAAGATCTTGGGCATTTCAAGTCGTAGATGTAAAAACTGCAGTGTGCACTTATAATAGACAGAATATTTTCATGGTTTGGTGAGATGCAAATACTGTTATCGGTATTGTTCTTGATTTAACAGgcttttaagggatagttcacacaaaactaaGAGAAAATTTCTTCACAGTTTACTCACAAACAAACTAACCGCTATTGGAATCCAGAGTAGGAACAACACAAAATGCAATGGATGTCAATGACTGCTGTTTTCCATAATTCTAgagtaaaataaaacttaaacaggtttaatCTCTTTAAGAGTGTCTGCTAAATGTTTGATGTTCGTTTGAATATGATCTTTCATTCAACATTAGTTATTTTGACTTGCTGACTTATGTTGACTGTTATtctgtttaaatgtgtgtaatttgaCCTGTAAAAGTGTTTTGGTCTCACAGTCGTTTTTACAGTTTATGAAAATGTATGCATTGTGATTGTAAAATTGTA

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0004896 cytokine receptor activity molecular_function
GO:0019955 cytokine binding molecular_function

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04066 HIF-1 signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04061 Viral protein interaction with cytokine and cytokine receptor
ko04640 Hematopoietic cell lineage
ko04659 Th17 cell differentiation
ko05200 Pathways in cancer
ko05171 Coronavirus disease - COVID-19
ko05163 Human cytomegalovirus infection
ko04932 Non-alcoholic fatty liver disease
ko01521 EGFR tyrosine kinase inhibitor resistance
ko04050 Cytokine receptors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-080107-7 Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including epidermis; immune system; lateral line; liver; and peripheral olfactory organ. Human ortholog(s) of this gene implicated in Alzheimer's disease; Huntington's disease; hyper IgE syndrome; obesity; and stomach cancer. Orthologous to human IL6R (interleukin 6 receptor).

Ensembl:

ensembl_id ENSDART00000163338

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020863 lncRNA downstream 113659 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00020861 lncRNA downstream 165795 22009140 ~ 22012320 (-) True XLOC_010654
TCONS_00021803 lncRNA downstream 165815 22009119 ~ 22012300 (-) False XLOC_010654
TCONS_00022155 lncRNA downstream 171663 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00021802 lncRNA downstream 187777 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00022156 lncRNA upstream 142286 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00022157 lncRNA upstream 170466 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00021804 lncRNA upstream 319976 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00021805 lncRNA upstream 319976 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00020894 lncRNA upstream 601069 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00020862 mRNA downstream 155659 22015648 ~ 22022456 (-) True XLOC_010655
TCONS_00020857 mRNA downstream 171119 21946091 ~ 22006996 (-) False XLOC_010652
TCONS_00020866 mRNA upstream 7504 22199510 ~ 22225295 (-) True XLOC_010658
TCONS_00020867 mRNA upstream 44955 22236961 ~ 22251457 (-) False XLOC_010659
TCONS_00020868 mRNA upstream 45031 22237037 ~ 22251414 (-) True XLOC_010659
TCONS_00020869 mRNA upstream 96771 22288777 ~ 22294265 (-) True XLOC_010660
TCONS_00020870 mRNA upstream 103656 22295662 ~ 22303130 (-) True XLOC_010661
TCONS_00020856 other downstream 260790 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 354866 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 369760 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 714397 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 726831 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 601069 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1143522 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1143536 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1147384 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 1331255 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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