RNA id: TCONS_00022159


Basic Information

Item Value
RNA id TCONS_00022159
length 2647
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id XLOC_010676
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23016957 ~ 23019603 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAATGTGATTGGCTCTTTGTCTTTGGACTGACGTCACTGGTGAATACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTGTGAGTACGATTTCATACTTTTGTCTCAAACAGTCCTCATTGTTTTCCTTTAATAAACAAAGTATGTAACCGTTAGCAAGAAAACCACATGTAAGATTAAGCTGTGTCTGACGTTAGGATCATGTTATTGTTCCGGTCAATCGCAACCGCCATTGCCACATTTATTAACAGTTCTAAGACGTGAAAAGTGCAAAGACGTGCGTAATAGGATCATGATAGatcatatattatgtaaaaaaaaagttaatgtaagtTTTGCCTGTGTTAGCGTATTCATTTATGCCACGTATAACCGATCACGGCCGCCGCATTTCATCTATATAATTCGTTACAGTTACGTGGAAACATGCTTTATGAGGTCGTCACGTATAAAGTTTAATATTGATGCTGTATTCGATGAGTCATCCGCGTTATCTTTTGTGTAAACTGATTATTTTTTCAGTGGTGGTTATGTGTCGTCAGATGTTTAGCATAACATAAcctgagctgtttttaacattttttttttttacttttttttcttgtaagtGAAGTATTAACTGACTAGAATACATTGAGATTTGCCCCTTCGGAAATACGAATTCATGTTAGTTGGCAGTTTTTAAAGATATGCAACCTCGTGCTCATCAGTCTTAGCAAGTGAATTTTCAGTTAATTAGAATGAAAGCTAAATAATTAACTGTAGCTCTCTAATTCTTTTGATTAACAATAGCTGTTTGTGGGAAATTTGGAGATAACAGATCAAattatgtaaatgtgttttgtcagctagtaatctaatgtatatttttgtaactGTAGATTGCAGAAAGATCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTAAGTATTGCTCATTTGCTTGTGACAAAAGATGGTACTTATTAAAACATTGCAGATTTAAACATGGGAGCTATGCAAAAAGCCAGCCATTTCCATGCATATATCAGGAATGTATTTGTAATGAAATGAGTACAGTATTGATAAACatgataacatgctaatttgacagttgtttaattttgacatttctctgatgttaataaacatttttgtgttttacTACTACAGGTGTATCAAGAGTTCAACCAGATAGTGTGGAAGAATCTTAAGCAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCGGATCTTCAGGTCAAAGAGAGGATTCACTGGACAGATTTTTATCTTCTACAAAATATCAAGGTTTGTGTATGCCATTGTTTGTACATGCCTTTGACATAAATTGATGCCATTGTGTGCTGAATTCTGAAATTTATATAATTACTTTAGAAATCCTCAGTGACAGAGACTAAATTTTAATACATGAAAATGCCCTTTCTCTCATGTTGACAAATGATACAATGTTGTTTCTCTGCAACACCTCAGGCGTCTGACCTCACTGACATGCCTTGTGTTGCCATTTGAGTGCTTCCAGTAGTTGTTGGTGATGACCCAACAGTTCTTCAAAGCATGTTTTGTAAGTATCCTTAATAAAAGTTTTTGTATATTAATCTAAgtttttttgcattatatttcTTAATGTGCATTTATGTtagcaataacaataaataaatcacccaAGCAATGTCTTATTGTAGTTCATTAATAAATAGAATAATGATCAACATGAAATTTGAATTCATGTTATAACTCCTTTGAAACTCTAAAATGATAAGTAGAATTATATAAAGTCTTTAGTAATTTAATTATATCAAATCTTTTTATGCCGTATGCATTGACTTGTACACaaaaatatttgtagtatttttatatttgatatatCATTGAATACTGGATATGTTTGGGTATACAATTAACAAATTATGCTTGCATACAACTAAAAAACATtacatacaaataatatatattaaaatcaaatgtaCACCTCTAAGatatatttatgttatctatttatTGTTGTCAGGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCAAGAAAATTAAGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATTCTCTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCAAGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGATGCTGAAGGGTAAGATTCTGGCTGTTAAAAATCAACTTGTCATGTAAACTGGTACAGAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACtgtgagataaaaaaaattaaaactatgcTTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTAAAATGTAATAACATCCTGtggttgtttattttttggatatgtttgtaaaaatgtatttaaaaattttaaacaagtgttttaataagatttataacaataaatattgaCTAATTGTTATACAAGGCATTTTCTAGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaataaactgtaaagtaaattttta

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022158 lncRNA downstream 30301 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020894 lncRNA downstream 153637 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00021805 lncRNA downstream 501436 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00021804 lncRNA downstream 502494 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00022157 lncRNA downstream 648517 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00020900 lncRNA upstream 316327 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00022160 lncRNA upstream 316887 23336490 ~ 23337574 (-) True XLOC_010677
TCONS_00022162 lncRNA upstream 697228 23716831 ~ 23719573 (-) False XLOC_010683
TCONS_00022161 lncRNA upstream 697228 23716831 ~ 23719573 (-) True XLOC_010683
TCONS_00020910 lncRNA upstream 769015 23788618 ~ 23792874 (-) True XLOC_010684
TCONS_00020896 mRNA downstream 27695 22918939 ~ 22989262 (-) True XLOC_010675
TCONS_00020895 mRNA downstream 86032 22896453 ~ 22930925 (-) False XLOC_010675
TCONS_00020891 mRNA downstream 153354 22781854 ~ 22863603 (-) False XLOC_010674
TCONS_00020901 mRNA upstream 319459 23339062 ~ 23346095 (-) False XLOC_010678
TCONS_00020903 mRNA upstream 333938 23353541 ~ 23372666 (-) False XLOC_010679
TCONS_00020904 mRNA upstream 333941 23353544 ~ 23379464 (-) True XLOC_010679
TCONS_00020905 mRNA upstream 446491 23466094 ~ 23471387 (-) True XLOC_010680
TCONS_00020908 mRNA upstream 769013 23788616 ~ 23797570 (-) False XLOC_010684
TCONS_00020893 other downstream 153642 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020856 other downstream 1099632 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 1193708 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 1208602 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1553239 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020898 other upstream 315925 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 315939 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 319787 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 503658 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020907 other upstream 572861 23592464 ~ 23592599 (-) True XLOC_010682

Expression Profile

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