XLOC_010675


Basic Information

Item Value
gene id XLOC_010675
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22894676 ~ 22989262 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022158
ATGAACACGCCAAGGTGCTCTGGAGTTTGCGCGATGATGAGACTTCTGGCGCTGTTTATACACGTTTTGTCAACGACTGCAAAGAGACACGTTGTATACTGGAACTCTACAAATACACGGTTAACTGGAGATGATTACTCTGTCCAGGTCAATCTGAGTGATTATCTGGATATACTGTGTCCTCACTATCCCGGCGACCACCCGTCCGGCGCTTCAGTGGAGACTCTGGCTCTGTATCTGGTGGCGGAGAGCCAGTTTAGGGGCTGCGTGGACACTAAAGAGGCCATTAAGAGATGGGAGTGCAATCAGCCGTTTGCTCCCTTCGGCCCTGTCAGGTTCTCTGAAAAGATCCAGCGCTTCACACCCTTCTCTCTAGGCTTTGAGTTCCTGCCCGGACACCATTACTACTATAGCTCTCTGTCCACAGACGACGGTCCTCCCCTCCCCTGCATGAAGCTGCGGGTCACTGTTTGCTGTCCGCCGACAACAGCTGGATCATCTAGACAAGAAGCCACAGAAACACCATCACACAGCACCACTGTCCAAAATATGACCTTGACACAACTTTTTCTTCTCCTCATCCCCTTCTTATTGTCTTATTTTCTTTAACATTTCTTCTCAAAGCATAAAAGCTAAACACAGGTTGCAGCATACATTCTTCCATAATCATCTGCATCTGTTACAGTAAATGTTTGCGGGATCACAGACTCTCTTTCTCTAAGTTTCTCCTGTGCTCCATCATGTTTGTCCTCCTCTAATCTCCATTTGCCGCTGTCTGCTCTGATAAAAGTTCACTCTGTAACAGAGTGACACTAATCTACCTTCAAAGAGCTGATCTTACTGTTCCTTTGCTTTTTAATCCATCTGTCCTTAAGAGTCTGACATTTCTTCACAAGCCGTCTGCTTCCCTTCTGTGCTACTGTACAACAAACTGAGCCAAAGACCATGAGAAGCGCTTTTACTACTGAGAGAAAGAGCAGGAACACACGTCTGATCACTGACATGAGGATCGAAGGTGGAAAAATAcaacttttccttttttttggaCATATTTGCTTCATAAGAAGAAGAAACAACAAGTTGAAGCCAAATTCAGATCGCAGCAGTTGAAGTTATTTTGCTGCATTGACTTTATGGAGGCTGGCAGAACTCTGGAAAAATCCTGGAGAACACACGGAAGAGAAAGAATTACTtcctgtttattgtttgtttgttcgttttgttttttaacaagcaTCTCCAAGTGTGGACACTTCTGATTGgttattaaaaggatagttcacccaatatatatttatatactgtcATTTACTTTTCCTGGTTGAAAACCTGTATgcgattttatttattaaaagtgattagttactttactttaaaaagtccaGTAAACATTATAAGCTacaatttttatgtaattatgcAAATGTTTGGTTTACTTAACAAATTATAGGCAATGGatctattcatttttttttaaataaagtcaataaaCTGCTTTATACAGTTTGTTGAAAAAAGGTACTTTGAAGAACGTTGCAAACTGCTACTTACACTCAGAAACAAAAGTACGAGAGCTGTAACtgtgtggtaccttttcaaatgcaacacatttgtacctaaaggatccatattagtacctaaaaagtaccttttaaAACTTTGGGTGCAAATATATGCTTTTGAGGtgccaatatggacccttcaagaaCAAATGTGTTTCTTTTGGAAAGGTAGCACCCAATGACACCtgtcatacctttatttctgatagtGATTAATTAAAATGACGTTGGTTGTTTGTTCAAATAACTTGTTTCAGACGTATGAGCTGAAACCACTAAATTCTTAAGGGTTTTTTGCAGACAACCAAAttgtttatgttaaatccacgtaaatctgtcaaaataataatagttaattcctttatgttgtcccaacacaaattgattgtgttgattttacagtgtattcaagATCCATGTTTAGAAGTATACTGAAATCCTGGATAActatcaatataaaaacatttctgaagatcTAAAAATGTTTATCAATTCAATgcaagttctttttttttatagacaTTAACGACTCAATTATTTTCCTATATGTATAGCTTCAATTGCTAATTCCAAATTAACTCTCAATGGCTactagttttcaacattcttcaaaatatcttcttttgtgttcaaccgatcaaatgaaactcaaaggtttgaggataagtaaatgatgagtacattttttggggtgaacttagCAATTTACTTTGGTGTAGAGTCGATTTGTTTATTAAGCACTTAATCAGGTTCAGAGAGCATGAGTTTCATCATCATGATTTTCCTTTTATTTGTTCGGTCTCATATTATTTTATGAGAAAGTAAATTACATGCAACAAAAGTGTTCGCTTTAACAATGAGAGAAGATGCAAAGTATTTCATGATTAATAATCATAAGCAATCATATTGCTTTCAGTTAGTCTGAAATGATGCAAAAAACGAAATGCTGGATATTTTGtaagcattttattattttttatgacatTATTATACAATACTTTATTTAGCAGTAAAGTCAAAGAATATTGTTTAGATGCTTAACAGTATTGGTAAAGAGATAATAAGGAAAAAGCTCAGAACATGAATAAAAgtggaaatgtttttatttaaattttatttgttcatttgtggaaaaaaaagtttgctctgtTCAGTTCTTACAATAATGATTTTGTCAAGTTTTTTAATCTGTTGGccctttttaaattctttttcttAAGTTTCTGTTGTActcttttatttttagattttcagATGCATTTGATGATCGCCAAAACAGAACAATcagggttttgtttttttaatacataCATGGTTTTTAGGAGtatagttttttcttcttctttttttcacatttttgtgaAGTGGTCAGCATCTTCTGTGAAGAAATATTGTGTTTTTCTAAAATGACCTGCAGAAATAAATTTTTAAGATG
>TCONS_00020895
GTTAACTGGAGATGATTACTCTGTCCAGGTCAATCTGAGTGATTATCTGGATATACTGTGTCCTCACTATCCCGGCGACCACCCGTCCGGCGCTTCAGTGGAGACTCTGGCTCTGTATCTGGTGGCGGAGAGCCAGTTTAGGGGCTGCGTGGACACTAAAGAGGCCATTAAGAGATGGGAGTGCAATCAGCCGTTTGCTCCCTTCGGCCCTGTCAGGTTCTCTGAAAAGATCCAGCGCTTCACACCCTTCTCTCTAGGCTTTGAGTTCCTGCCCGGACACCATTACTACTATAGCTCTCTGTCCACAGACGACGGTCCTCCCCTCCCCTGCATGAAGCTGCGGGTCACTGTTTGCTGTCCGCCGACAACAGCTGGATCATCTAGACAAGAAGCCACAGAAACACCATCACACAGCACCACTGTCCAAAATATGACCTTGACACAACTTTTTCTTCTCCTCATCCCCTTCTTATTGTCTTATTTTCTTTAACATTTCTTCTCAAAGCATAAAAGCTAAACACAGGTTGCAGCATACATTCTTCCATAATCATCTGCATCTGTTACAGTAAATGTTTGCGGGATCACAGACTCTCTTTCTCTAAGTTTCTCCTGTGCTCCATCATGTTTGTCCTCCTCTAATCTCCATTTGCCGCTGTCTGCTCTGATAAAAGTTCACTCTGTAACAGAGTGACACTAATCTACCTTCAAAGAGCTGATCTTACTGTTCCTTTGCTTTTTAATCCATCTGTCCTTAAGAGTCTGACATTTCTTCACAAGCCGTCTGCTTCCCTTCTGTGCTACTGTACAACAAACTGAGCCAAAGACCATGAGAAGCGCTTTTACTACTGAGAGAAAGAGCAGGAACACACGTCTGATCACTGACATGAGGATCGAAGGTGGAAAAATAcaacttttccttttttttggaCATATTTGCTTCATAAGAAGAAGAAACAACAAGTTGAAGCCAAATTCAGATCGCAGCAGTTGAAGTTATTTTGCTGCATTGACTTTATGGAGGCTGGCAGAACTCTGGAAAAATCCTGGAGAACACACGGAAGAGAAAGAATTACTtcctgtttattgtttgtttgttcgttt
>TCONS_00020896
TTACAGATGTCCAacttcatcaaaatatcttcttttttACTTCTGGCGCTGTTTATACACGTTTTGTCAACGACTGCAAAGAGACACGTTGTATACTGGAACTCTACAAATACACGGTTAACTGGAGATGATTACTCTGTCCAGGTCAATCTGAGTGATTATCTGGATATACTGTGTCCTCACTATCCCGGCGACCACCCGTCCGGCGCTTCAGTGGAGACTCTGGCTCTGTATCTGGTGGCGGAGAGCCAGTTTAGGGGCTGCGTGGACACTAAAGAGGCCATTAAGAGATGGGAGTGCAATCAGCCGTTTGCTCCCTTCGGCCCTGTCAGGTTCTCTGAAAAGATCCAGCGCTTCACACCCTTCTCTCTAGGCTTTGAGTTCCTGCCCGGACACCATTACTACTATAGCTCTCTGTCCACAGACGACGGTCCTCCCCTCCCCTGCATGAAGCTGCGGGTCACTGTTTGCTGTCCGCCGAGTGAGTTCCTCCTCTCTCCATTTTCatccacacatttttttttcctttaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007507 heart development biological_process
GO:0035265 organ growth biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0014855 striated muscle cell proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055017 cardiac muscle tissue growth biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0060419 heart growth biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0014902 myotube differentiation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0043292 contractile fiber cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030054 cell junction cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005231 excitatory extracellular ligand-gated ion channel activity molecular_function
GO:0098960 postsynaptic neurotransmitter receptor activity molecular_function
GO:0099529 neurotransmitter receptor activity involved in regulation of postsynaptic membrane potential molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-100922-64 Predicted to enable ephrin receptor binding activity. Predicted to be involved in axon guidance and ephrin receptor signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Orthologous to human EFNA4 (ephrin A4).

Ensembl:

ensembl_id ENSDARG00000090427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022158 False 2997 lncRNA 0.36 5 22894676 22986656
TCONS_00020895 False 1101 mRNA 0.45 4 22896453 22930925
TCONS_00020896 True 531 mRNA 0.49 4 22918939 22989262

Neighbor

gene id symbol gene type direction distance location
XLOC_010674 shc1 coding downstream 31073 22781854 ~ 22863603 (-)
XLOC_010673 lenep coding downstream 113230 22779229 ~ 22781446 (-)
XLOC_010672 pbxip1b coding downstream 119148 22750174 ~ 22775528 (-)
XLOC_010671 tlr19 coding downstream 147551 22737481 ~ 22747125 (-)
XLOC_010670 tlr19 coding downstream 165185 22722352 ~ 22729491 (-)
XLOC_010676 NA coding upstream 27695 23016957 ~ 23019603 (-)
XLOC_010677 CT030031.1 coding upstream 346266 23335528 ~ 23337596 (-)
XLOC_010678 si:dkey-247k7.2 coding upstream 349800 23339062 ~ 23346095 (-)
XLOC_010679 trim46a coding upstream 364279 23353541 ~ 23379464 (-)
XLOC_010680 CR533578.3 coding upstream 476832 23466094 ~ 23471387 (-)
XLOC_010626 CR392024.2 misc downstream 1999501 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 379155 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 526236 22362472 ~ 22368440 (-)
XLOC_010662 NA non-coding downstream 559159 22334292 ~ 22335517 (-)
XLOC_010656 CR855277.4 non-coding downstream 830220 22060569 ~ 22064456 (-)
XLOC_010654 NA non-coding downstream 882356 22009119 ~ 22012320 (-)
XLOC_010681 CR533578.4 non-coding upstream 533999 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 non-coding upstream 603202 23592464 ~ 23592599 (-)
XLOC_010683 NA non-coding upstream 727569 23716831 ~ 23719573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_04524446_04527464 NA coding CI01000027 null 4523811 ~ 4527464 (-)