XLOC_010672 (pbxip1b)


Basic Information

Item Value
gene id XLOC_010672
gene name pbxip1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22750174 ~ 22775528 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020885
GAGACGGAAGGCGTGTCAACGAAACTGCACACTTGCGTTTGAAACTTTGCAGAAGACACGAGTGAGTGGTGGGAATTAAAGCGGTACTTAAGGCGGAAAGGTGCTTCAGAGTAACTAGTTGCTGGACGGAGTCGCTAGGGGTTAATGTCAGAAAACGGCACCAGTACTAATGGCAACAACTGGACTCTTCTGACCCCAGAAGTAAAGGAGTCTGGAGCTAAGAATATGAGTCCAGTAACTGAAGGTCTTAAGGTGGAGGAGCAGCTCTCTAAAGCACCTGAGCCCTCAACATTGGCCCACAGTGACCTGGAGAAACACTCCTCTGATGCATCTGCTCACCAGCCAGAGACTGAGACATCAGCACAGATTCAGTCTGACCCAGCTCTCAGCCAAGGGTCAGAAAAAACACAGGAAACTCAGATAACGCCACCAGAGACAAGTGAGGGTCGGGCTCAGCTGAATGCAGCACATGTCAATGAAGGCCCCAGCTCTGTTAGTGTTGAAGACATTAGCTCCTGGAGTCCTGACCATGAGGAACAAGATGCCCTTGCAGGTCATTTGGAGAGCCCAGCGTGTCCCGGCACTGATGCAGAGTCATTCTCTGACTCTTACTCTCACATTAGTCCCACCACTGGATCGAGCCCTGTTCCTGCTTCAGTGTGTAAAGAAAGAGACCACTTTAAATCAGATGAAGAAACTCTGAGGAAAAGCACAGGTGAAGAGCCGAAGGAAGTGTTGGAAACAAACGGGAAAGAGGGAGACGGTTTAAGAAAGAGAAAGATCTCCCACCTGGGCTCTTTGGACAAGACTGAGATAGAGGATGATgaagagaaggaggaggaagactTTCAGCCGCCTCAAAGAGAAGAGGAAACTGTCTTTACTTTAAACAAGTGTATCATCGCAGCTATCATTCTTCTAGGGCTTGGGACCATTTTTTTCTCTGAAGCAGATGTGGATGTTAGAGAGCTGAAGGATCCGCCAAATCAGGATTGGCTGAATCTTGAAGACTCCAGAGACACGCCTGTTGGCCTTCAGCCTCCAGACATTTTAAGCAAACACACAAAGGACGATCAGCAAATATTGGCTCTACAGGCACAGCTTCAGCAATATCAAGGTGAACTGAAAGCAGCGCAGCTTCTGGCAGAGACAGGAGAGAAGGAGCGCGAGCGGAGAGAAGAGCTGGAGAAGGAGTATCAGAGGATTAAAGAAGAACTAGACAGACTGCCTGCTCTTCAGAAGGAGCTGGAGCAGGAGAACGAGAGAATGAAAGAAGAAAGTGCAAGAGCGCAGAAAGAGCTGAAGGCGCTGCCGTCGCTGCAGAGCGAACTGGAGCATCTGAGAGCTCAAGTTTCCCAGCTCACAGTAAAAGCAGAACATCAGCATCCCATTGCCACCTCTCGGACCCCCCCTGCTGGAGACAAAAGAGATGTACCACCTATAGAAAGACCAGACATAAGGAACAGGAAGACCTGGGACAAAAAGACTGAGGAAAAGGAACAAAGCAAAGCAGATAAAGAATGGAAAAAGAAGAAGAGTGGAAAAAAGGAAGGTGACAAAGACAGAAAAGAGAAAGTGACGGATGGAGAACATACTAAAGAACAAAAGGACCGGAAAAAAGAGGAAGGCAAAGCAGGCAAGCAAAGAGAAGAGAAAAGGGAGTggaaaaaggacaaaaaacaAGATGAAGGTAAAATAGGGAGGGAAAGAGGAGAGAAGTGGGGGGAGAAGAGAGAATGGAATGATGAAAAAAAGGGGAAGAAAGACAAACATACGGAAAAGGATGACAAAAAGGGAAACAAACAGGACTGGAAGGATACTGCCAACAAGaaagtgaaagaagaaaaagaacGTAAACAGAAAGACTGGAAAAGTGATAAACACAGTGGCGTGAATGACCATAGAGAAGGGAAAGAGAATAAGAAAGAGGAATGGAAAGGTAAAAAGGAAAAGGGTGAGGGAAAACACAATGAGAAGAAATGGAAAGGAGACAGAGAAGAGCATGCTGGAAAAGAAAAAGAGCAAAAGCACCCGAGAGGCAAAGAAAGAGAGTCCAAAAAGGAAGAGTGGACAAGAGATCACGTGAAGGAAGAGAAAAAACACAAAGCGCACCACCccaaaaatgagttgaaaaacaGCCCCAATGAAAAGGAGAAAGGACAGAAAGAGAAACACAGGAACACACCTCCAGACAAAACCTCCGGCCATCACCATCACGAGCAGCAGAACTACTGGACCAAACAGAGAGAGCGGATCCAGCACTATGATGACCTGCGGGACCACTGCACCGGCGTGGAGGACTGCGCTCGAGTCGAAGGTCTCTCCCCTGTACACCTGCATGACTTCGAGAACCTGCTCCAGTCCTACATGAACAAACTCCAGGAGGAACAGAGCTCAAGTAAAGAGGAGCTCAGGAAGCTGGTGAGGGAGTTCTTCAATAACGGAGTGTTCGCTCATGATCAGATGCCCTTCAGTGAATTTGTAGAAGACGTGGGGGACATTTTGGAGGACATGGCTGAAGGAGAAGAGAGCGACACTGAGGCGGAGGACAGCGAAGAGGACgacgacgacgatgatgatgatgagatgGAGGATTTCGAAAGAGAAGCGATGGAGAAATTTGCACTTCCAGCAGAAGTGAAGAAGGTTGAAGATTCTTCGAGGAAAAAAAGGTACATGTTGAAACTGTCGGGTCTGAGTTAATTTGccgattaataatattaatataatgtgtCATTTCTGAAGAGTTTATTCATTTTCATCATTAAGCtttggctttgttttttttttcatagataAAGCTGTACTGCTGTAAATCCTTAATGATGATGGTGTCCTGCTTCATAACAGCTGTTTCTGCTCACTTTTCTCACATTTTATTTGGGAACGATACGCAAGCTTAAATAAAGGTTCATTGAGAGGCTTCTGATCAGTCAACTAAAGGTCTGgtgttgcatttataaaacaGTCTTAAAGCGATGGTCCATCTAAAAATGTTCAAACATATTTGAGTTTTTCTTCTGTCTAACATAAaagaaagtgttttgaaaaatgctggttgctgagaCCCATTGGCTGTTTCTTAATGTGTGTTGTTAAGGGAACCTTTGTCCTTGTGCTCTTGTCTAACATCCCGCAAGAACACCTGACACGTGAAAGAACTCAGATTTGATATTGAGGATGAATCGATGCAAACTTGCTTGATTGTAGCACTCGCTCCACATCCTAGAATGATTGTAGATAAGAAGGAGGGAAGTTGATGCTGATAATGTTGCAGTTGACAGCACTATGGTGCTCATGGTGAACACAGTTTATATTGactattatttacagttttagttACAGTATTTACAGTTTTCCTAAAGTGAACATGAAAACATTAATGAAGGGATAAACATGCACAAAGGCATTTATTTCCTGAAGTTCATCatgaaatcatttttattttcattatcagaATTATATTTGCAGGGTTTTTTGAACAtcatatgtttattaaaaacgaaaaaaagcaataaatcaaTGTACAGATTTTCTTTTCATATTCCTTCAACTTATTTGCTTTAtatatcagggattgccacagcagaatgacccgccaacttatccagcatgtattttacgcagcggatgcccttccagcactgggaaacacccatacacactcattcatacatatacactactagcaatttagtttattcaattcacctgtaccgcatgtctttggactgtgggagaaaccggagcacccagaggaaacccacacgaacacggggagaacatgcaagctctacacagaaatgcaaactgacccagccgaggctcgaaccagtgaccttgctgtgaggggacagtgctatcaactgagccaccatgttgccttgCTGTACAAATGTCACAAGGTTAAATTGCTTGAAACTCATGTGACCGTCAGAAAGATTGCagatctcatttctcacaggatgtgTTCTGTGTTCTGGCCTTTTtccatgtttatttattcagGTTATTTGGCAAGACTGGTCTACAAGAGAACCAGAGACTGCATTTTGCAttcttggaattaagaaacagccatTGATGGATGGAGCCACAATGGAAGTCAAATGGTcctagcaaccagcattcttcaaaatatcttcttttgcattcaacagaagaaaaataaaggttttaaaatacatgatgtatttatttacatttttgggtgagccaTCCCTTTGAAATGCGTAAGTAAATAAAatgcgttttatttatttttggtcttAAGGAATGATAGGAATCTTCCCGTTAAAGAAATTCTTAGAATTCTGACAATGACTTCAAACGTTTACTGCCTGTAAACGTAACCGCCAATGAGGCAAGACAAGAttgtaaaaaaagaagttaaaattTGTTTTGTGCTTATCAATTGTTACATTTATATTTCTCAAACACtgtaaaattaaactttaataaaagtatataataatttataattataatttaaaaacaaaattttaattcCAATTAAAAGAGTCATGCAGGCAAAGTCAAGTCCAGGTattgttatcattttttttaataacagaataaccttatttgttaaaaatgatcattttattCCAAAAAATGTTCCTGAAagaatatttgacttttttttttaaagaaaggatGAGGGAAGGGGTTGGGGGATTAATAGGACACTCATGAATCCGGCTTCCtgcataaatgatgacagagggAACAATGTCAGGAACGGCCTGTGTTTTCTTTATCTGCTGTCATGGGACATCAGGTTTATATTTAAAACCTGCCACGTCtcgcacaaatataatattttctgGGACTATTCATCAGAAGAATGTAGTTCAGTGTTGAGTGTGAGGGACGTTTTTAATGCTACTCATATTTTGCAGCTGTTGAAAGTCATCACATGATTGTTGATTTGCATTTTGAAGATAATACTTTGCTTATATTGGGTGTACAGCTGTTGAGTGAAAAACAGTTGACTGATAACAATAGAGTTTTATTAATGTTCATCATGTTTgtaattctctttttttttcttaaatatttttttgttttcagtgttAGCCTCCTGAGCTACTGCTTCAGATGTGTTTGGCAGCTTCACTGTTATTTATACAGTTTAACAAATGGTCTCTTTTAGTAAATGACGTGTGTATTGTCTGGCACTTTTGTAGGCTGCTTGTTCGAAAAAGTTACTCTAGCCAGCTGAAATATTAGCAAGTCTGTTAAGTGAAGTGCAGGTCACCTTAGTTTTATGTCATTTATAATTAGTGTTTTTACATTCTGGTCTCTATTGCGCGCATCAAACTAAAGGCTGTCAGACAAGATCTTTAAGTTTAGCTTTTGCAGCATGTGCTGTATTGAACTGTCAAGTGAAACAATTGCATTGTAGCTACACTTCGCTGCTTAACGGCAGTGGGTAGAAATTTGAAAGACCACTAAATTGAAACAAAATGTACAAGAATGAAAAATGTAACACTACAGTAATATGCTTAGTATTTGTTAAAGTGGCTAAAGTTGATATGGTGGTTATTGTAGTGGGAAATGAttttgctttgaaacatcacaaAATAAACAGATGCACACAA
>TCONS_00020886
AAACTTTGCAGAAGACACGAGTGAGTGGTGGGAATTAAAGCGGTACTTAAGGCGGAAAGGTGCTTCAGAGTAACTAGTTGCTGGACGGAGTCGCTAGGGGTTAATGTCAGAAAACGGCACCAGTACTAATGGCAACAACTGGACTCTTCTGACCCCAGAAGTAAAGGAGTCTGGAGCTAAGAATATGAGTCCAGTAACTGAAGGTCTTAAGGTGGAGGAGCAGCTCTCTAAAGCACCTGAGCCCTCAACATTGGCCCACAGTGACCTGGAGAAACACTCCTCTGATGCATCTGCTCACCAGCCAGAGACTGAGACATCAGCACAGATTCAGTCTGACCCAGCTCTCAGCCAAGGGTCAGAAAAAACACAGGAAACTCAGATAACGCCACCAGAGACAAGTGAGGGTCGGGCTCAGCTGAATGCAGCACATGTCAATGAAGGCCCCAGCTCTGTTAGTGTTGAAGACATTAGCTCCTGGAGTCCTGACCATGAGGAACAAGATGCCCTTGCAGGTCATTTGGAGAGCCCAGCGTGTCCCGGCACTGATGCAGAGTCATTCTCTGACTCTTACTCTCACATTAGTCCCACCACTGGATCGAGCCCTGTTCCTGCTTCAGTGTGTAAAGAAAGAGACCACTTTAAATCAGATGAAGAAACTCTGAGGAAAAGCACAGGTGAAGAGCCGAAGGAAGTGTTGGAAACAAACGGGAAAGAGGGAGACGGTTTAAGAAAGAGAAAGATCTCCCACCTGGGCTCTTTGGACAAGACTGAGATAGAGGATGATgaagagaaggaggaggaagactTTCAGCCGCCTCAAAGAGAAGAGGAAACTGTCTTTACTTTAAACAAGTGTATCATCGCAGCTATCATTCTTCTAGGGCTTGGGACCATTTTTTTCTCTGGTGTGCTCATGGATGCGGATGATgAAGCAGATGTGGATGTTAGAGAGCTGAAGGATCCGCCAAATCAGGATTGGCTGAATCTTGAAGACTCCAGAGACACGCCTGTTGGCCTTCAGCCTCCAGACATTTTAAGCAAACACACAAAGGACGATCAGCAAATATTGGCTCTACAGGCACAGCTTCAGCAATATCAAGGTGAACTGAAAGCAGCGCAGCTTCTGGCAGAGACAGGAGAGAAGGAGCGCGAGCGGAGAGAAGAGCTGGAGAAGGAGTATCAGAGGATTAAAGAAGAACTAGACAGACTGCCTGCTCTTCAGAAGGAGCTGGAGCAGGAGAACGAGAGAATGAAAGAAGAAAGTGCAAGAGCGCAGAAAGAGCTGAAGGCGCTGCCGTCGCTGCAGAGCGAACTGGAGCATCTGAGAGCTCAAGTTTCCCAGCTCACAGTAAAAGCAGAACATCAGCATCCCATTGCCACCTCTCGGACCCCCCCTGCTGGAGACAAAAGAGATGTACCACCTATAGAAAGACCAGACATAAGGAACAGGAAGACCTGGGACAAAAAGACTGAGGAAAAGGAACAAAGCAAAGCAGATAAAGAATGGAAAAAGAAGAAGAGTGGAAAAAAGGAAGGTGACAAAGACAGAAAAGAGAAAGTGACGGATGGAGAACATACTAAAGAACAAAAGGACCGGAAAAAAGAGGAAGGCAAAGCAGGCAAGCAAAGAGAAGAGAAAA
>TCONS_00020887
CTTTGCAGAAGACACGAGTGAGTGGTGGGAATTAAAGCGGTACTTAAGGCGGAAAGGTGCTTCAGAGTAACTAGGAGTCTGGAGCTAAGAATATGAGTCCAGTAACTGAAGGTCTTAAGGTGGAGGAGCAGCTCTCTAAAGCACCTGAGCCCTCAACATTGGCCCACAGTGACCTGGAGAAACACTCCTCTGATGCATCTGCTCACCAGCCAGAGACTGAGACATCAGCACAGATTCAGTCTGACCCAGCTCTCAGCCAAGGGTCAGAAAAAACACAGGAAACTCAGATAACGCCACCAGAGACAAGTGAGGGTCGGGCTCAGCTGAATGCAGCACATGTCAATGAAGGCCCCAGCTCTGTTAGTGTTGAAGACATTAGCTCCTGGAGTCCTGACCATGAGGAACAAGATGCCCTTGCAGGTCATTTGGAGAGCCCAGCGTGTCCCGGCACTGATGCAGAGTCATTCTCTGACTCTTACTCTCACATTAGTCCCACCACTGGATCGAGCCCTGTTCCTGCTTCAGTGTGTAAAGAAAGAGACCACTTTAAATCAGATGAAGAAACTCTGAGGAAAAGCACAGGTGAAGAGCCGAAGGAAGTGTTGGAAACAAACGGGAAAGAGGGAGACGGTTTAAGAAAGAGAAAGATCTCCCACCTGGGCTCTTTGGACAAGACTGAGATAGAGGATGATgaagagaaggaggaggaagactTTCAGCCGCCTCAAAGAGAAGAGGAAACTGTCTTTACTTTAAACAAGTGTATCATCGCAGCTATCATTCTTCTAGGGCTTGGGACCATTTTTTTCTCTGAAGCAGATGTGG
>TCONS_00020888
GCAGAAGACACGAGTGAGTGGTGGGAATTAAAGCGGTACTTAAGGCGGAAAGGTGCTTCAGAGTAACTAGTCCTATAGTGGAGTCGGCGTCCTCAATGAACTCGTTGCTGGACGGAGTCGCTAGGGGTTAATGTCAGAAAACGGCACCAGTACTAATGGCAACAACTGGACTCTTCTGACCCCAGAAGTAAAGGAGTCTGGAGCTAAGAATATGAGTCCAGTAACTGAAGGTCTTAAGGTGGAGGAGCAGCTCTCTAAAGCACCTGAGCCCTCAACATTGGCCCACAGTGACCTGGAGAAACACTCCTCTGATGCATCTGCTCACCAGCCAGAGACTGAGACATCAGCACAGATTCAGTCTGACCCAGCTCTCAGCCAAGGGTCAGAAAAAACACAGGAAACTCAGATAACGCCACCAGAGACAAGTGAGGGTCGGGCTCAGCTGAATGCAGCACATGTCAATGAAGGCCCCAGCTCTGTTAGTGTTGAAGACATTAGCTCCTGGAGTCCTGACCATGAGGAACAAGA

Function

symbol description
pbxip1b Predicted to be involved in regulation of Rho guanyl-nucleotide exchange factor activity. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human PBXIP1 (PBX homeobox interacting protein 1).

GO:

id name namespace
GO:2001106 regulation of Rho guanyl-nucleotide exchange factor activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2032 Predicted to be involved in regulation of Rho guanyl-nucleotide exchange factor activity. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human PBXIP1 (PBX homeobox interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000011824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020885 False 5603 mRNA 0.41 9 22750174 22775528
TCONS_00020886 False 1640 mRNA 0.48 10 22754120 22775487
TCONS_00020887 False 825 mRNA 0.49 5 22761619 22775484
TCONS_00020888 True 528 mRNA 0.51 5 22767700 22775480

Neighbor

gene id symbol gene type direction distance location
XLOC_010671 tlr19 coding downstream 3049 22737481 ~ 22747125 (-)
XLOC_010670 tlr19 coding downstream 20683 22722352 ~ 22729491 (-)
XLOC_010669 si:ch211-105c13.3 coding downstream 36982 22695211 ~ 22713192 (-)
XLOC_010668 s100t coding downstream 66788 22681818 ~ 22683386 (-)
XLOC_010667 cgna coding downstream 164865 22520712 ~ 22585309 (-)
XLOC_010673 lenep coding upstream 3701 22779229 ~ 22781446 (-)
XLOC_010674 shc1 coding upstream 6326 22781854 ~ 22863603 (-)
XLOC_010675 NA coding upstream 119148 22894676 ~ 22989262 (-)
XLOC_010676 NA coding upstream 241429 23016957 ~ 23019603 (-)
XLOC_010677 CT030031.1 coding upstream 560000 23335528 ~ 23337596 (-)
XLOC_010626 CR392024.2 misc downstream 1854999 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 234653 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 381734 22362472 ~ 22368440 (-)
XLOC_010662 NA non-coding downstream 414657 22334292 ~ 22335517 (-)
XLOC_010656 CR855277.4 non-coding downstream 685718 22060569 ~ 22064456 (-)
XLOC_010654 NA non-coding downstream 737854 22009119 ~ 22012320 (-)
XLOC_010681 CR533578.4 non-coding upstream 747733 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 non-coding upstream 816936 23592464 ~ 23592599 (-)

Expression


Co-expression Network