RNA id: TCONS_00020885


Basic Information

Item Value
RNA id TCONS_00020885
length 5603
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_010672
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22750174 ~ 22775528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGACGGAAGGCGTGTCAACGAAACTGCACACTTGCGTTTGAAACTTTGCAGAAGACACGAGTGAGTGGTGGGAATTAAAGCGGTACTTAAGGCGGAAAGGTGCTTCAGAGTAACTAGTTGCTGGACGGAGTCGCTAGGGGTTAATGTCAGAAAACGGCACCAGTACTAATGGCAACAACTGGACTCTTCTGACCCCAGAAGTAAAGGAGTCTGGAGCTAAGAATATGAGTCCAGTAACTGAAGGTCTTAAGGTGGAGGAGCAGCTCTCTAAAGCACCTGAGCCCTCAACATTGGCCCACAGTGACCTGGAGAAACACTCCTCTGATGCATCTGCTCACCAGCCAGAGACTGAGACATCAGCACAGATTCAGTCTGACCCAGCTCTCAGCCAAGGGTCAGAAAAAACACAGGAAACTCAGATAACGCCACCAGAGACAAGTGAGGGTCGGGCTCAGCTGAATGCAGCACATGTCAATGAAGGCCCCAGCTCTGTTAGTGTTGAAGACATTAGCTCCTGGAGTCCTGACCATGAGGAACAAGATGCCCTTGCAGGTCATTTGGAGAGCCCAGCGTGTCCCGGCACTGATGCAGAGTCATTCTCTGACTCTTACTCTCACATTAGTCCCACCACTGGATCGAGCCCTGTTCCTGCTTCAGTGTGTAAAGAAAGAGACCACTTTAAATCAGATGAAGAAACTCTGAGGAAAAGCACAGGTGAAGAGCCGAAGGAAGTGTTGGAAACAAACGGGAAAGAGGGAGACGGTTTAAGAAAGAGAAAGATCTCCCACCTGGGCTCTTTGGACAAGACTGAGATAGAGGATGATgaagagaaggaggaggaagactTTCAGCCGCCTCAAAGAGAAGAGGAAACTGTCTTTACTTTAAACAAGTGTATCATCGCAGCTATCATTCTTCTAGGGCTTGGGACCATTTTTTTCTCTGAAGCAGATGTGGATGTTAGAGAGCTGAAGGATCCGCCAAATCAGGATTGGCTGAATCTTGAAGACTCCAGAGACACGCCTGTTGGCCTTCAGCCTCCAGACATTTTAAGCAAACACACAAAGGACGATCAGCAAATATTGGCTCTACAGGCACAGCTTCAGCAATATCAAGGTGAACTGAAAGCAGCGCAGCTTCTGGCAGAGACAGGAGAGAAGGAGCGCGAGCGGAGAGAAGAGCTGGAGAAGGAGTATCAGAGGATTAAAGAAGAACTAGACAGACTGCCTGCTCTTCAGAAGGAGCTGGAGCAGGAGAACGAGAGAATGAAAGAAGAAAGTGCAAGAGCGCAGAAAGAGCTGAAGGCGCTGCCGTCGCTGCAGAGCGAACTGGAGCATCTGAGAGCTCAAGTTTCCCAGCTCACAGTAAAAGCAGAACATCAGCATCCCATTGCCACCTCTCGGACCCCCCCTGCTGGAGACAAAAGAGATGTACCACCTATAGAAAGACCAGACATAAGGAACAGGAAGACCTGGGACAAAAAGACTGAGGAAAAGGAACAAAGCAAAGCAGATAAAGAATGGAAAAAGAAGAAGAGTGGAAAAAAGGAAGGTGACAAAGACAGAAAAGAGAAAGTGACGGATGGAGAACATACTAAAGAACAAAAGGACCGGAAAAAAGAGGAAGGCAAAGCAGGCAAGCAAAGAGAAGAGAAAAGGGAGTggaaaaaggacaaaaaacaAGATGAAGGTAAAATAGGGAGGGAAAGAGGAGAGAAGTGGGGGGAGAAGAGAGAATGGAATGATGAAAAAAAGGGGAAGAAAGACAAACATACGGAAAAGGATGACAAAAAGGGAAACAAACAGGACTGGAAGGATACTGCCAACAAGaaagtgaaagaagaaaaagaacGTAAACAGAAAGACTGGAAAAGTGATAAACACAGTGGCGTGAATGACCATAGAGAAGGGAAAGAGAATAAGAAAGAGGAATGGAAAGGTAAAAAGGAAAAGGGTGAGGGAAAACACAATGAGAAGAAATGGAAAGGAGACAGAGAAGAGCATGCTGGAAAAGAAAAAGAGCAAAAGCACCCGAGAGGCAAAGAAAGAGAGTCCAAAAAGGAAGAGTGGACAAGAGATCACGTGAAGGAAGAGAAAAAACACAAAGCGCACCACCccaaaaatgagttgaaaaacaGCCCCAATGAAAAGGAGAAAGGACAGAAAGAGAAACACAGGAACACACCTCCAGACAAAACCTCCGGCCATCACCATCACGAGCAGCAGAACTACTGGACCAAACAGAGAGAGCGGATCCAGCACTATGATGACCTGCGGGACCACTGCACCGGCGTGGAGGACTGCGCTCGAGTCGAAGGTCTCTCCCCTGTACACCTGCATGACTTCGAGAACCTGCTCCAGTCCTACATGAACAAACTCCAGGAGGAACAGAGCTCAAGTAAAGAGGAGCTCAGGAAGCTGGTGAGGGAGTTCTTCAATAACGGAGTGTTCGCTCATGATCAGATGCCCTTCAGTGAATTTGTAGAAGACGTGGGGGACATTTTGGAGGACATGGCTGAAGGAGAAGAGAGCGACACTGAGGCGGAGGACAGCGAAGAGGACgacgacgacgatgatgatgatgagatgGAGGATTTCGAAAGAGAAGCGATGGAGAAATTTGCACTTCCAGCAGAAGTGAAGAAGGTTGAAGATTCTTCGAGGAAAAAAAGGTACATGTTGAAACTGTCGGGTCTGAGTTAATTTGccgattaataatattaatataatgtgtCATTTCTGAAGAGTTTATTCATTTTCATCATTAAGCtttggctttgttttttttttcatagataAAGCTGTACTGCTGTAAATCCTTAATGATGATGGTGTCCTGCTTCATAACAGCTGTTTCTGCTCACTTTTCTCACATTTTATTTGGGAACGATACGCAAGCTTAAATAAAGGTTCATTGAGAGGCTTCTGATCAGTCAACTAAAGGTCTGgtgttgcatttataaaacaGTCTTAAAGCGATGGTCCATCTAAAAATGTTCAAACATATTTGAGTTTTTCTTCTGTCTAACATAAaagaaagtgttttgaaaaatgctggttgctgagaCCCATTGGCTGTTTCTTAATGTGTGTTGTTAAGGGAACCTTTGTCCTTGTGCTCTTGTCTAACATCCCGCAAGAACACCTGACACGTGAAAGAACTCAGATTTGATATTGAGGATGAATCGATGCAAACTTGCTTGATTGTAGCACTCGCTCCACATCCTAGAATGATTGTAGATAAGAAGGAGGGAAGTTGATGCTGATAATGTTGCAGTTGACAGCACTATGGTGCTCATGGTGAACACAGTTTATATTGactattatttacagttttagttACAGTATTTACAGTTTTCCTAAAGTGAACATGAAAACATTAATGAAGGGATAAACATGCACAAAGGCATTTATTTCCTGAAGTTCATCatgaaatcatttttattttcattatcagaATTATATTTGCAGGGTTTTTTGAACAtcatatgtttattaaaaacgaaaaaaagcaataaatcaaTGTACAGATTTTCTTTTCATATTCCTTCAACTTATTTGCTTTAtatatcagggattgccacagcagaatgacccgccaacttatccagcatgtattttacgcagcggatgcccttccagcactgggaaacacccatacacactcattcatacatatacactactagcaatttagtttattcaattcacctgtaccgcatgtctttggactgtgggagaaaccggagcacccagaggaaacccacacgaacacggggagaacatgcaagctctacacagaaatgcaaactgacccagccgaggctcgaaccagtgaccttgctgtgaggggacagtgctatcaactgagccaccatgttgccttgCTGTACAAATGTCACAAGGTTAAATTGCTTGAAACTCATGTGACCGTCAGAAAGATTGCagatctcatttctcacaggatgtgTTCTGTGTTCTGGCCTTTTtccatgtttatttattcagGTTATTTGGCAAGACTGGTCTACAAGAGAACCAGAGACTGCATTTTGCAttcttggaattaagaaacagccatTGATGGATGGAGCCACAATGGAAGTCAAATGGTcctagcaaccagcattcttcaaaatatcttcttttgcattcaacagaagaaaaataaaggttttaaaatacatgatgtatttatttacatttttgggtgagccaTCCCTTTGAAATGCGTAAGTAAATAAAatgcgttttatttatttttggtcttAAGGAATGATAGGAATCTTCCCGTTAAAGAAATTCTTAGAATTCTGACAATGACTTCAAACGTTTACTGCCTGTAAACGTAACCGCCAATGAGGCAAGACAAGAttgtaaaaaaagaagttaaaattTGTTTTGTGCTTATCAATTGTTACATTTATATTTCTCAAACACtgtaaaattaaactttaataaaagtatataataatttataattataatttaaaaacaaaattttaattcCAATTAAAAGAGTCATGCAGGCAAAGTCAAGTCCAGGTattgttatcattttttttaataacagaataaccttatttgttaaaaatgatcattttattCCAAAAAATGTTCCTGAAagaatatttgacttttttttttaaagaaaggatGAGGGAAGGGGTTGGGGGATTAATAGGACACTCATGAATCCGGCTTCCtgcataaatgatgacagagggAACAATGTCAGGAACGGCCTGTGTTTTCTTTATCTGCTGTCATGGGACATCAGGTTTATATTTAAAACCTGCCACGTCtcgcacaaatataatattttctgGGACTATTCATCAGAAGAATGTAGTTCAGTGTTGAGTGTGAGGGACGTTTTTAATGCTACTCATATTTTGCAGCTGTTGAAAGTCATCACATGATTGTTGATTTGCATTTTGAAGATAATACTTTGCTTATATTGGGTGTACAGCTGTTGAGTGAAAAACAGTTGACTGATAACAATAGAGTTTTATTAATGTTCATCATGTTTgtaattctctttttttttcttaaatatttttttgttttcagtgttAGCCTCCTGAGCTACTGCTTCAGATGTGTTTGGCAGCTTCACTGTTATTTATACAGTTTAACAAATGGTCTCTTTTAGTAAATGACGTGTGTATTGTCTGGCACTTTTGTAGGCTGCTTGTTCGAAAAAGTTACTCTAGCCAGCTGAAATATTAGCAAGTCTGTTAAGTGAAGTGCAGGTCACCTTAGTTTTATGTCATTTATAATTAGTGTTTTTACATTCTGGTCTCTATTGCGCGCATCAAACTAAAGGCTGTCAGACAAGATCTTTAAGTTTAGCTTTTGCAGCATGTGCTGTATTGAACTGTCAAGTGAAACAATTGCATTGTAGCTACACTTCGCTGCTTAACGGCAGTGGGTAGAAATTTGAAAGACCACTAAATTGAAACAAAATGTACAAGAATGAAAAATGTAACACTACAGTAATATGCTTAGTATTTGTTAAAGTGGCTAAAGTTGATATGGTGGTTATTGTAGTGGGAAATGAttttgctttgaaacatcacaaAATAAACAGATGCACACAA

Function

GO:

id name namespace
GO:2001106 regulation of Rho guanyl-nucleotide exchange factor activity biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2032 Predicted to be involved in regulation of Rho guanyl-nucleotide exchange factor activity. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human PBXIP1 (PBX homeobox interacting protein 1).

Ensembl:

ensembl_id ENSDART00000127570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021805 lncRNA downstream 234653 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00021804 lncRNA downstream 235711 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00022157 lncRNA downstream 381734 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00022156 lncRNA downstream 414657 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00020863 lncRNA downstream 685718 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00020894 lncRNA upstream 17547 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00022158 lncRNA upstream 119148 22894676 ~ 22986656 (-) False XLOC_010675
TCONS_00020897 lncRNA upstream 241429 23016957 ~ 23019562 (-) False XLOC_010676
TCONS_00022159 lncRNA upstream 241429 23016957 ~ 23019603 (-) True XLOC_010676
TCONS_00020900 lncRNA upstream 560402 23335930 ~ 23337596 (-) False XLOC_010677
TCONS_00020883 mRNA downstream 3049 22737481 ~ 22747125 (-) False XLOC_010671
TCONS_00020884 mRNA downstream 5368 22739305 ~ 22744806 (-) True XLOC_010671
TCONS_00020882 mRNA downstream 20683 22724604 ~ 22729491 (-) True XLOC_010670
TCONS_00020881 mRNA downstream 21055 22722352 ~ 22729119 (-) False XLOC_010670
TCONS_00020879 mRNA downstream 36982 22695211 ~ 22713192 (-) False XLOC_010669
TCONS_00020889 mRNA upstream 3701 22779229 ~ 22781446 (-) True XLOC_010673
TCONS_00020891 mRNA upstream 6326 22781854 ~ 22863603 (-) False XLOC_010674
TCONS_00020890 mRNA upstream 6326 22781854 ~ 22863603 (-) False XLOC_010674
TCONS_00020892 mRNA upstream 6482 22782010 ~ 22863348 (-) False XLOC_010674
TCONS_00020895 mRNA upstream 120925 22896453 ~ 22930925 (-) False XLOC_010675
TCONS_00020856 other downstream 832849 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 926925 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 941819 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 1286456 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 1298890 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 17547 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 560000 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 560014 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 563862 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 747733 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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