G133108


Basic Information

Item Value
gene id G133108
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5901703 ~ 5902803 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166910
ggggggtcgGTCGGTGTGTTTTTCGGCACATCTGCACGGAgccaaattattaattacagcAGCTCCGCCGACTGCAGGCCCGAGTGTGTGCGGCTGCCCATCCAGCGGTCGCCGACGCGCAGCTCGCCCGCCTGACAGTGCTCAGAGCCGGTGTGAGGCGCTACTCGAGGCCGGGGCTCggagagtttttctttttttttttttgatgggggggtcttgtttttatttgtgtaccCCTCTCTTATCTCCCCCTTTTTTTCCTCCAGAGACCTTAAACGATCGCGGTGTACTGTGTTCTTGGACGGAAAGAGGGGATTTTGAAAGCTCAGGAAAAAAGTCTCATATTTCGGGATTATTTTCGTTTCCATCGAGGCCGCTTTGTTTAGCACAGGGAGGATTTATATAACCGAGGTGATCATGTATATCCGTCTGCGAAGCTACTTTTCtcgttttaaatatatatttgtgtgcatgtgtgtgttattgtggcCCACGGCTGTGTGGCAGAACCGCTGGACCGGCCACATCGACTCGACCCGGCCGGGGTCTTGATCTGGGCTGGACGAAGAACGGCtttcctgttatttattaatttaccgtgtttctaattattattaccactattattactactactattactgaTAGTAGTAGTCGTATTGAGCTGAAAGAGTTGTAAACAAACCATCAACCATTAAATACTCATATTTAACTGTTGGACACCGTGACATCAATTAATTATCGTTATGGTTAATAGATACATTGTTATCCGTTATGAATGATCGAGGTGATGTGCACACATTGATCGAagtgattataattattatagtttCTTATTGTTATGAATTATAGTGTGTGATGTGTGGACCTGGACCGAGGGGTCCATCTCTCCAAACGTGTGTCCCGGTCGGCTGCGTGGCTTTGAGTGATTTGAATAACTGCATTTTGGAAATGATAATGGAAACCTGGCCGCTGTGATTCATATGAAAGTATGTTATGGTGTGTTGTAGTAGTGTTCAGGtgtatttcttgtatttataGACTtactctctcagtgcagtgttaatgtgctgtagtgttcagtgtgtctgtattaacccN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166910 True 1101 lncRNA 0.44 1 5901703 5902803

Neighbor

gene id symbol gene type direction distance location
AMCG00011834 NA coding upstream 18265 5871969 ~ 5883438 (+)
AMCG00011836 dcaf11 coding upstream 51695 5846142 ~ 5850008 (+)
AMCG00011835 psme1,LOC107691441 coding upstream 58890 5835610 ~ 5842813 (+)
AMCG00011839 NA coding upstream 76837 5818212 ~ 5824866 (+)
AMCG00011838 LOC101484004,LOC103375112,LOC102294892 coding upstream 109426 5788969 ~ 5792277 (+)
AMCG00011855 NA coding downstream 7678 5910481 ~ 5911354 (+)
AMCG00011852 NA coding downstream 22104 5924907 ~ 5936489 (+)
AMCG00011851 NA coding downstream 48909 5951712 ~ 5973380 (+)
AMCG00011854 NA coding downstream 71294 5974097 ~ 5980285 (+)
AMCG00011850 NA coding downstream 78817 5981620 ~ 5982817 (+)
G133090 NA non-coding upstream 31547 5869945 ~ 5870156 (+)
G133077 NA non-coding upstream 46994 5854488 ~ 5854709 (+)
G133074 NA non-coding upstream 48978 5851874 ~ 5852725 (+)
G133066 NA non-coding upstream 56644 5844264 ~ 5845059 (+)
G133060 NA non-coding upstream 67662 5833815 ~ 5834041 (+)
G133115 NA non-coding downstream 30019 5932822 ~ 6007588 (+)
G133129 NA non-coding downstream 89514 5992317 ~ 6035986 (+)
G133132 NA non-coding downstream 95806 5998609 ~ 5999231 (+)
G133145 NA non-coding downstream 164771 6067574 ~ 6077385 (+)
G133248 NA non-coding downstream 321503 6224306 ~ 6224519 (+)
AMCG00011837 NA other upstream 12819 5886917 ~ 5888884 (+)
G133059 NA other upstream 72171 5828801 ~ 5829532 (+)
AMCG00011830 vmhcl,LOC107560354 other upstream 140455 5759858 ~ 5761248 (+)
AMCG00011806 NA other upstream 781605 5115090 ~ 5120098 (+)
AMCG00011771 NA other upstream 1924041 3903675 ~ 3977662 (+)
AMCG00011873 NA other downstream 182049 6084852 ~ 6102011 (+)
AMCG00011876 NA other downstream 353147 6255950 ~ 6260389 (+)
G133327 NA other downstream 581144 6483947 ~ 6489208 (+)
AMCG00011909 ccnb1ip1 other downstream 642585 6545388 ~ 6560662 (+)
AMCG00011917 NA other downstream 742073 6644876 ~ 6653731 (+)

Expression


Co-expression Network